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GitLab

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<h3>

Nilesh Patra pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/subread">Debian Med / subread</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/subread/-/commit/a84ca1d880ee2ddace82d81ead5bbd822a9defaf">a84ca1d8</a></strong>

<div>

<span>by Nilesh Patra</span>

<i>at 2021-04-21T13:43:52+00:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.2+dfsg</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9b9715372d0cd39d21711a077b6f2ae42fb45135">

doc/SubreadUsersGuide.tex

</a>

</li>

<li class="file-stats">

<a href="#7079f81404dcaadc0154c53a419b2d1cb5f253e6">

src/HelperFunctions.c

</a>

</li>

<li class="file-stats">

<a href="#e8151656777acee64e1f016170e308d49d0a7f96">

src/HelperFunctions.h

</a>

</li>

<li class="file-stats">

<a href="#de13a8a387b0f71a691e5d23cf74468d6ad7c0a0">

src/core-bigtable.c

</a>

</li>

<li class="file-stats">

<a href="#296b4814ae931def4e82a8f84e22f6c24f5b3b14">

src/core-indel.c

</a>

</li>

<li class="file-stats">

<a href="#ecc92c74c51f8b1692fd1bd13b9657e456522c0a">

src/core-interface-aligner.c

</a>

</li>

<li class="file-stats">

<a href="#431a9a7f741eae0019b2785bf4ae504ca6fe0271">

src/core-interface-subjunc.c

</a>

</li>

<li class="file-stats">

<a href="#d7c9610d0bb39f36045810aea42dfc930a2d041f">

src/core-junction.c

</a>

</li>

<li class="file-stats">

<a href="#4db02b816f2ce650b526f0903f40471e89ca152a">

src/core-junction.h

</a>

</li>

<li class="file-stats">

<a href="#a26ea438a2b6aee04f419d17c87da7e9b997e7ae">

src/core.c

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</li>

<li class="file-stats">

<a href="#3ff152fe6bda3f5dfee9715abff394de66921551">

src/core.h

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</li>

<li class="file-stats">

<a href="#0cd9a7b1d1859b9b5f8aa2a313c4ccab061915c5">

src/gen_rand_reads.c

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</li>

<li class="file-stats">

<a href="#18d5c843fdde01c811087dacdcf7dbe1f38af4d3">

src/gene-algorithms.c

</a>

</li>

<li class="file-stats">

<a href="#40d901ab9acccc80547ea96bc7257d6bbd327710">

src/gene-algorithms.h

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</li>

<li class="file-stats">

<a href="#18817811a7810da84ec451359a001a4b28ef5c43">

src/gene-value-index.c

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</li>

<li class="file-stats">

<a href="#6612baeecf620e30ab51b9fb8e8a2afe1d40812b">

src/hashtable.c

</a>

</li>

<li class="file-stats">

<a href="#30c07b024c4fcae2a43837631bde802ba5d8e371">

src/hashtable.h

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</li>

<li class="file-stats">

<a href="#db883abc086707d455e41cc6745055f2475bcc7f">

src/index-builder.c

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</li>

<li class="file-stats">

<a href="#8ef51f137a175e45ca9d53b6eaeb6f55a775893d">

src/input-blc.c

</a>

</li>

<li class="file-stats">

<a href="#1d3ea1dfb44bc278d2d0dc98242cbaff49bcccb9">

src/input-blc.h

</a>

</li>

<li class="file-stats">

<a href="#af240e90f84ee342e36f1a8ee0eb08f1a4b16a3d">

src/input-files.c

</a>

</li>

<li class="file-stats">

<a href="#6907133cceb8c785482dac4a3125dbff95a3d8e2">

src/input-files.h

</a>

</li>

<li class="file-stats">

<a href="#b54deb05cbbce1fba6522f8a51bd892a992d53bc">

src/longread-one/LRMchro-event.c

</a>

</li>

<li class="file-stats">

<a href="#cf98638ed9ada3bf84ac8a5129dd28658be36288">

src/longread-one/LRMseek-zlib.c

</a>

</li>

<li class="file-stats">

<a href="#4d075f9c8f48325589258b0e43848200e65828fb">

src/longread-one/LRMsorted-hashtable.c

</a>

</li>

<li class="file-stats">

<a href="#6a9ad9e4d8f98c30ea2782d88883fe3dfa692581">

src/longread-one/longread-mapping.c

</a>

</li>

<li class="file-stats">

<a href="#86f05d6363b34826c2e03806456e9ce18568c2c9">

<span class="new-file">

+

src/longread-one/make.version

</span>

</a>

</li>

<li class="file-stats">

<a href="#76cc7b82fd823387133c6778766e61c15828100c">

src/makefile.version

</a>

</li>

<li class="file-stats">

<a href="#787706e498691849b216b7618643b7f4ec174438">

src/mergeVCF.c

</a>

</li>

<li class="file-stats">

<a href="#f0f6828628b764f4bbcc239f3b0257341f4b5517">

src/propmapped.c

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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