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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/93ff8c3bf0745257d5cb38bfe3ba198dac4d4b5a">93ff8c3b</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:09:06+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/394da5dee114e443f06b66cea928604bdb54637d">394da5de</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:09:08+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.1+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/fade63ed09573378020d1673b209327eb29a5fe9">fade63ed</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:09:15+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.1+ds'
Update to upstream version '1.2.1+ds'
with Debian dir 7ea7ec53ee1a6b9c9c4bbee5c49a314dd2837124</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/dc5098967c07af7956e8c09b791d276373e075ed">dc509896</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:09:16+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/6db26bcc758382321e61dec9beee9adda68c1051">6db26bcc</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:09:16+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/5b659f265bd881578718adb2cb48019c09c51ef7">5b659f26</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:18:04+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh and remove merged patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/ae001adbb1cbbf77da2bd43a09bb46e60e119e73">ae001adb</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:25:41+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">changes prefix to PREFIX (capitalised in Makefile.in)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/356213f0c9fce3c3675654e6f269abc6df52795e">356213f0</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:29:40+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enhance d/u/metadata
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/b2d41bf045a2bb0660ca8bee1ce41bddc8becb9f">b2d41bf0</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T15:53:56+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/hardening.patch: Propagate hardening options
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/74b86b5504b32ff4eea6430f300afb6839982fa2">74b86b55</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T10:48:59+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/tests/run-unit-test: Fix file locations
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/6782f8ab582bb5e54febe955d8720a2fcf8922ae">6782f8ab</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-04-22T11:04:27+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add TODO
</pre>
</li>
</ul>
<h4>21 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#81a9a5b123fb5e9473f68e4733e9d389fa7872c9">
<span class="deleted-file">
−
debian/patches/gcc10.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<span class="new-file">
+
debian/patches/hardening.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#0e851bd9762dc8b6b479bde9cdff0e089eb7d986">
debian/patches/link_lnlopt.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#3248aecdaec4501f854170eb2bbac56ae69f372f">
<span class="new-file">
+
doc/Programs.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#52a150923ee954b15f1adb8630fc1fa1dc4cbe99">
<span class="new-file">
+
example_files/pxtrt_example/taxa_to_retain.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b2209274208343ab8c659be9d33fcccef4cd598">
<span class="new-file">
+
example_files/pxtrt_example/yule_100taxa.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#77475f8c988d3b9cb259fc2cfb4d8a582d54d30d">
<span class="new-file">
+
src/TEST/AA_5tax_interleaved.NEX
</span>
</a>
</li>
<li class="file-stats">
<a href="#9d4e28af6c88f8397d68e6b8fb6979d21f9f7722">
<span class="new-file">
+
src/TEST/Binary_5tax.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#e66bfaaffb9e892be60af276e6b62ad68f6f6161">
src/TEST/Concatenated.phy
→
src/TEST/Concatenated.fa
</a>
</li>
<li class="file-stats">
<a href="#5ef71e8d3ad5efa810c214b77c35913054b031ed">
<span class="new-file">
+
src/TEST/figtree.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a9b32e2bae4440015ce9dece8bd8a92e49fdf47">
<span class="new-file">
+
src/TEST/linebreak.tre
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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