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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4804bf104abb3551e8e399e5eae19b2ed9cf9e83">4804bf10</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-04-23T13:42:22+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4804bf104abb3551e8e399e5eae19b2ed9cf9e83#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 23 Apr 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 23 Apr 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">9</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">8</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> openslide | 41 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> nipype | 29 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> htsjdk | 27 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 17 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> gdcm | 15 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> odin | 1<span class="idiff left right">4</span> | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> odin | 1<span class="idiff left right">3</span> | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicomnifti | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gnumed-server | 12 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> orthanc-webviewer | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk </span> | 1<span class="idiff">1</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left">pixelmed</span> | 1<span class="idiff">2</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> nifticlib | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> mia | <span class="idiff left right">10</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> mia | <span class="idiff left right"> 9</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> nifti2dicom | 8 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,13 +37,12 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> melting | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> salmid | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> nifticlib | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> o<span class="idiff left">penslide </span> | 5 | {<span class="idiff right">imaging-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> o<span class="idiff left">rthanc-dicomweb</span> | 5 | {<span class="idiff right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bamkit | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> busco | 4 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,10 +51,11 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> king | 4 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> librg-utils-perl | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> o<span class="idiff left">rthanc-dicomweb</span> | 4 | {<span class="idiff right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> o<span class="idiff left">penslide </span> <span class="idiff"> </span>| 4 | {<span class="idiff right">imaging-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> staden | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> beast-mcmc | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> biojava-live | 3 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,10 +68,9 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> oscar | 3 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> salmon | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> spread-phy | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> anfo | 2 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -80,18 +79,17 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> ghmm | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> libdivsufsort | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> oscar | 2 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> perm | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> phyutility | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> piler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> plasmidid | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> python-wdlparse | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> rtax | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> saint | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,6 +129,7 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> placnet | 1 | {bio} | </span>
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132
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> prime-phylo | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> proalign | 1 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> python-wdlparse | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> quorum | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> rdp-alignment | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,5 +239,5 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext">(2<span class="idiff left right">70</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext">(2<span class="idiff left right">69</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"></span></pre>
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