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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd1c08db7f2677d7f499fa70ab3580ad75c146ba">fd1c08db</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-05-10T13:42:20+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd1c08db7f2677d7f499fa70ab3580ad75c146ba#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 10 May 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 10 May 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 51 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 51 | {imaging,laboratory,practice,his,covid-19,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> openslide | 3<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> openslide | 3<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> nipype | 30 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">8</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> odin | 1<span class="idiff left right">8</span> | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">7</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> odin | 1<span class="idiff left right">7</span> | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gnumed-server | 15 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> dicomnifti | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> nifticlib | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> dicomnifti | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> nifticlib | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> orthanc-webviewer | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> orthanc-webviewer | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> bamkit | 8 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> dicompyler | 8 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> openslide | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom </span> | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> <span class="idiff left">king </span> | 7 | {imaging<span class="idiff right">,typesetting}</span> | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> <span class="idiff left">mia </span> | <span class="idiff">7</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk</span> | <span class="idiff">7</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> <span class="idiff left">librg-utils-perl</span> | 6 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> <span class="idiff left">bart-view </span> | <span class="idiff">5</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> <span class="idiff left right">plastimatch</span> | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> <span class="idiff left">vtk-dicom</span> | 7 | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> <span class="idiff left">king</span> | <span class="idiff">6</span> | {imaging<span class="idiff right">,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> <span class="idiff left">mia </span> | <span class="idiff">6</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk </span> | 6 | {bio<span class="idiff right">-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> <span class="idiff left">orthanc-dicomweb</span> | <span class="idiff">6</span> | {imaging<span class="idiff right">,covid-19}</span> | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> melting | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> blasr | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> oscar | 4 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> salmid | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> ea-utils | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,6 +79,7 @@ Last-Update: Mon, 10 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> obitools | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> paraclu | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> phyutility | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> piler | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,7 +116,7 @@ Last-Update: Mon, 10 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> mauve-aligner | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> mhap | 1 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> microbegps | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> orthanc-<span class="idiff left">gdcm </span> | 1 | {<span class="idiff right">imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> orthanc-<span class="idiff left">python</span> | 1 | {<span class="idiff right">covid-19}</span> | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> phast | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> proalign | 1 | {bio-phylogeny,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -192,7 +193,6 @@ Last-Update: Mon, 10 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> opensurgsim | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> orthanc-python | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -204,8 +204,8 @@ Last-Update: Mon, 10 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> pscan-chip | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> python-epimodels | 0 | {epi} | </span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> python-wdlparse | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> quorum | 0 | {bio} | </span>
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