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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/kraken2">Debian Med / kraken2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/8e4c399b4546a74be0d25a05c55ac73e6a229d0d">8e4c399b</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:27:23+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/watch: Fix watch regex
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/3f39d64f77a425bd021efc8a1cc0bffb9ccc9c5f">3f39d64f</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:27:32+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.1.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/c4438426a30c37b83b3da5c71ab796fac3b62d46">c4438426</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:27:34+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.1.2'
Update to upstream version '2.1.2'
with Debian dir 88160893a288aef361e3cf7e79fd12a5aa593a80</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/75acfe19a14db4ef9196f53a3ce33f168fbec595">75acfe19</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:31:26+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Propagate more hardening flags
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/613e27cc9aa44ef5b914b91fd40add5de391b453">613e27cc</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:32:22+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Declare compliance with policy 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken2/-/commit/dcd81a21cf70eddcff375b263f61b0e6a117a872">dcd81a21</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-05-12T00:33:08+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Interim changelog entry
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#daec55684b92e88c6403d8faab9c4389851e6ff7">
debian/patches/hardening+debug_options.patch
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#4ed8d2333b1b6ed5fa2f86af766e794d0c45ec8a">
docs/MANUAL.html
</a>
</li>
<li class="file-stats">
<a href="#7145a153c90ef224cdf9125798666fd1d3fa1c6e">
docs/top.html
</a>
</li>
<li class="file-stats">
<a href="#82902ec2642f154b058c3bb5e4075825a0309054">
install_kraken2.sh
</a>
</li>
<li class="file-stats">
<a href="#3b3b195884b742528a0c82d5935c190d96e758c3">
scripts/16S_gg_installation.sh
</a>
</li>
<li class="file-stats">
<a href="#72ba7c346f5408cb37f9cfc9a2efb52bb5c2bd8a">
scripts/16S_rdp_installation.sh
</a>
</li>
<li class="file-stats">
<a href="#18d6157bebda7b06d922f088da8134175792170f">
scripts/16S_silva_installation.sh
</a>
</li>
<li class="file-stats">
<a href="#2075ac61243cf06c69822dbf2bf7ab04372bcd6d">
scripts/add_to_library.sh
</a>
</li>
<li class="file-stats">
<a href="#87d8ae891848948d3bdcc402521393acf991bf9a">
scripts/build_gg_taxonomy.pl
</a>
</li>
<li class="file-stats">
<a href="#ce420d450ba632fe5751d5bcb844b4e4ad1a3bc5">
scripts/build_kraken2_db.sh
</a>
</li>
<li class="file-stats">
<a href="#46d4e6b324d050fe9808028fadce1bda47191879">
scripts/build_rdp_taxonomy.pl
</a>
</li>
<li class="file-stats">
<a href="#cf855dda0502e01078bc964df43160b0f71fcd75">
scripts/build_silva_taxonomy.pl
</a>
</li>
<li class="file-stats">
<a href="#f049b8cc05244415b04d5cb27b48f650e01908bc">
scripts/clean_db.sh
</a>
</li>
<li class="file-stats">
<a href="#9b432a77f5560974c99a8d1d6e953392e6129707">
scripts/cp_into_tempfile.pl
</a>
</li>
<li class="file-stats">
<a href="#16c00b6d9c53b146191706cc0ae38d02a5f350d7">
scripts/download_genomic_library.sh
</a>
</li>
<li class="file-stats">
<a href="#c463e03abae1829d63b98cbcf4ebb30c1ee3b4c1">
scripts/download_taxonomy.sh
</a>
</li>
<li class="file-stats">
<a href="#aaf40245dc841465c94516137ec0511c98cbf8b7">
scripts/kraken2
</a>
</li>
<li class="file-stats">
<a href="#af9aaef9f3afad77ce62625abc3a246c274a3630">
scripts/kraken2-build
</a>
</li>
<li class="file-stats">
<a href="#aa878f37523ecd02c9d75e9ffa1030adaf464496">
scripts/kraken2-inspect
</a>
</li>
<li class="file-stats">
<a href="#5603c2f05bd168e525e3b323f76bf92ef84f9431">
scripts/kraken2lib.pm
</a>
</li>
<li class="file-stats">
<a href="#fb5ba3efed885f52a05623809fd573e65f8fe385">
scripts/lookup_accession_numbers.pl
</a>
</li>
<li class="file-stats">
<a href="#a81756b3276f40293636f76b5879ba78b3f35ed3">
scripts/make_seqid2taxid_map.pl
</a>
</li>
<li class="file-stats">
<a href="#50cea4ce0c5dd57b20f35c31afc2bc048872d5d2">
scripts/mask_low_complexity.sh
</a>
</li>
<li class="file-stats">
<a href="#add685e6a2fde9c3f6175348cfa0c6d21acb91f7">
scripts/rsync_from_ncbi.pl
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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