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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3ac0ca672c5480f5227acc093e1ba397238dae0d">3ac0ca67</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-05-27T13:42:20+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3ac0ca672c5480f5227acc093e1ba397238dae0d#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 May 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 May 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 172 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 91 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 50 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {oncology,his,imaging,covid-19,practice,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 176 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 50 | {oncology,his,imaging,covid-19,practice,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 49 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 30 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 29 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> htsjdk | 29 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> nipype | 27 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gdcm | 20 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 20 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 20 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> openslide | 20 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> minc-tools | 1<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> minc-tools | 1<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> odin | 16 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gnumed-server | 15 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,27 +23,29 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> dicomnifti | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> <span class="idiff left">insighttoolkit4</span> | 9 | {<span class="idiff right">imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> <span class="idiff left">adun.app </span> | 9 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> king | 9 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> mia | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> nifti2dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> openslide | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> bamkit | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> nipype | 7 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> openslide | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> busco | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> melting | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> salmid | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> bamkit | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> oscar | 4 | {tools,practice,data} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> salmid | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> salmon | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> treeview | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> biojava-live | 3 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,11 +72,11 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> embassy-domalign | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> ghmm | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> libdivsufsort | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> obitools | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> plasmidid | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> sight | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> anfo | 1 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,7 +97,6 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> fastml | 1 | {bio} | </span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> intake | 1 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> ipig | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> libdivsufsort | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> libmuscle | 1 | {bio-dev} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libncl | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -114,7 +114,6 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> python-bcbio-gff | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> quorum | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> rambo-k | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> saint | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,7 +165,6 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> libics | 0 | {covid-19,imaging-dev} | </span>
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> libmaus2 | 0 | {bio-dev,covid-19} | </span>
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -196,15 +194,16 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> pigx-rnaseq | 0 | {bio,covid-19} | </span>
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197
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> piler | 0 | {bio} | </span>
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198
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> plasmidid | 0 | {covid-19,bio} | </span>
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199
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> plasmidseeker | 0 | {bio} | </span>
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200
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> pplacer | 0 | {bio,covid-19,bio-phylogeny} | </span>
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201
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> proalign | 0 | {bio-phylogeny,bio} | </span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> pscan-chip | 0 | {bio} | </span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> python-epimodels | 0 | {epi} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> python-wdlparse | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> rambo-k | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> rdp-alignment | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> rdp-classifier | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,7 +236,9 @@ Last-Update: Thu, 27 May 2021 01:42:04 +0000</td>
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> yaha | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> yanagiba | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> zalign | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> libmaus2 | -1 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> python-seqcluster | -1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext">(2<span class="idiff left right">69</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">(2<span class="idiff left right">70</span> rows)</span>
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