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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/95c8be8e1a57370bb460ad8d99697edc34e72c3a">95c8be8e</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T01:45:03+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/watch: Fix watch regex
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/a7025e90709a185befdc124b5662888a059455cf">a7025e90</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T01:45:21+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.9a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/dcb3abe18a3fde73db4f0b9de846c67bcb578b49">dcb3abe1</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T01:45:24+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.9a+dfsg'
Update to upstream version '2.7.9a+dfsg'
with Debian dir 2a2458f6e2fb9526e7382446c9f50fee72b273e7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/582c64ef5a56fe6ff2be14819dbfeafc2ed77d66">582c64ef</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T01:50:47+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh d/p/donotuse_own_htslib.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/86bdf32590180c35920e693000bb22149a970102">86bdf325</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T02:05:06+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh d/p/reproducible.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/c5475802b4b4299c86bb00dc3f38a5b598817786">c5475802</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T02:05:52+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">drop simde.patch, merged upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/5f34406cfaf07a9636d8ef9a803a2268fb0d4b4d">5f34406c</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T02:06:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Interim changelog entry
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
</a>
</li>
<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#5dc91bdd30262777c0556235b73413cd5865a144">
<span class="deleted-file">
−
debian/patches/simde.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
</a>
</li>
<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#45a5381dc64d7040bb8c8cc19e6cece9e38433d5">
<span class="new-file">
+
extras/scripts/calcUMIperCell.awk
</span>
</a>
</li>
<li class="file-stats">
<a href="#369aad69e84616aae99a20db9e62395f04aff2f3">
<span class="new-file">
+
extras/scripts/sjBED12.awk
</span>
</a>
</li>
<li class="file-stats">
<a href="#4332004840dc5d8a2b0726ea6c2372c1c907340b">
source/ClipCR4.cpp
</a>
</li>
<li class="file-stats">
<a href="#fa05ae659f594e5796fa5252b076654a9a0b0e31">
source/ClipMate_clip.cpp
</a>
</li>
<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
</a>
</li>
<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
</a>
</li>
<li class="file-stats">
<a href="#09b38547a28087b813616bd2a7334493c3862c48">
source/Parameters.h
</a>
</li>
<li class="file-stats">
<a href="#bf27f52254916f0127a15b2aa4242b8679bb9815">
source/ParametersSolo.cpp
</a>
</li>
<li class="file-stats">
<a href="#924480e837c06acd1472c069adb0bb8cae0b6bc1">
source/ParametersSolo.h
</a>
</li>
<li class="file-stats">
<a href="#cede17459d086a5e7ad5b0dbcfff22b4e4861435">
source/Parameters_samAttributes.cpp
</a>
</li>
<li class="file-stats">
<a href="#0f351bd6f52ff0c9ab03a4771ab917025e709afc">
source/ReadAlignChunk.cpp
</a>
</li>
<li class="file-stats">
<a href="#a65bb3bc4e4db0e24eae08bd0218daa68661e87d">
source/ReadAlignChunk_mapChunk.cpp
</a>
</li>
<li class="file-stats">
<a href="#764c3cfc36fad2f293fd356112b8836ea61e0b02">
source/ReadAlign_alignBAM.cpp
</a>
</li>
<li class="file-stats">
<a href="#38255560373004439a41922897da553297a784d2">
source/ReadAlign_outputAlignments.cpp
</a>
</li>
<li class="file-stats">
<a href="#4896a67af34962395106d0bd2c41b227ffde5a58">
source/STAR.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe90b02c2a1b9c4383b00f761ae92e70b34253ac">
source/SequenceFuns.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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