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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/a7025e90709a185befdc124b5662888a059455cf">a7025e90</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-06-06T01:45:21+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.9a+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
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<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
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<li class="file-stats">
<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
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<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
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<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
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<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
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<li class="file-stats">
<a href="#45a5381dc64d7040bb8c8cc19e6cece9e38433d5">
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+
extras/scripts/calcUMIperCell.awk
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<li class="file-stats">
<a href="#369aad69e84616aae99a20db9e62395f04aff2f3">
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extras/scripts/sjBED12.awk
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<li class="file-stats">
<a href="#4332004840dc5d8a2b0726ea6c2372c1c907340b">
source/ClipCR4.cpp
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<li class="file-stats">
<a href="#fa05ae659f594e5796fa5252b076654a9a0b0e31">
source/ClipMate_clip.cpp
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<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
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<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
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<li class="file-stats">
<a href="#09b38547a28087b813616bd2a7334493c3862c48">
source/Parameters.h
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<li class="file-stats">
<a href="#bf27f52254916f0127a15b2aa4242b8679bb9815">
source/ParametersSolo.cpp
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<li class="file-stats">
<a href="#924480e837c06acd1472c069adb0bb8cae0b6bc1">
source/ParametersSolo.h
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<li class="file-stats">
<a href="#cede17459d086a5e7ad5b0dbcfff22b4e4861435">
source/Parameters_samAttributes.cpp
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<li class="file-stats">
<a href="#0f351bd6f52ff0c9ab03a4771ab917025e709afc">
source/ReadAlignChunk.cpp
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<li class="file-stats">
<a href="#a65bb3bc4e4db0e24eae08bd0218daa68661e87d">
source/ReadAlignChunk_mapChunk.cpp
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<li class="file-stats">
<a href="#764c3cfc36fad2f293fd356112b8836ea61e0b02">
source/ReadAlign_alignBAM.cpp
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<li class="file-stats">
<a href="#38255560373004439a41922897da553297a784d2">
source/ReadAlign_outputAlignments.cpp
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<li class="file-stats">
<a href="#4896a67af34962395106d0bd2c41b227ffde5a58">
source/STAR.cpp
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<li class="file-stats">
<a href="#fe90b02c2a1b9c4383b00f761ae92e70b34253ac">
source/SequenceFuns.cpp
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<li class="file-stats">
<a href="#6e52cf07d4f41150d4ef4085d2c0153bde9a4143">
source/Solo.cpp
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<li class="file-stats">
<a href="#33f45b79f1f9bda8465b510723d68b41620cc2dd">
source/SoloCommon.h
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<li class="file-stats">
<a href="#98c393866800d04da4ea79fd64781006cb0713ab">
source/SoloFeature.h
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<li class="file-stats">
<a href="#333a5582a57096f1c1b6e9624612dd784d5ce8a8">
source/SoloFeatureTypes.h
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<li class="file-stats">
<a href="#2ce04271e5214fcd449bb4917e94be04695c6534">
source/SoloFeature_cellFiltering.cpp
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<li class="file-stats">
<a href="#2eb361a8154aea66a88a8c736df011ba1791ece4">
source/SoloFeature_collapseUMIall.cpp
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<h5>The diff was not included because it is too large.</h5>
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