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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/hdmf">Debian Med / hdmf</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d">389da78e</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-06-11T00:30:03+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.7</pre>
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#9b0869c9ecbb8a6f13e0602b6bff34190dec2598">
src/hdmf.egg-info/PKG-INFO
</a>
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<li class="file-stats">
<a href="#ba66a4d062f6b50b4f5b0c916099b2f2e9ba2d43">
src/hdmf/_version.py
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<li class="file-stats">
<a href="#a999f3c1bdf8d2700a51a304c56e4e011c54c16f">
src/hdmf/build/__init__.py
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<li class="file-stats">
<a href="#c7265cb3d8504f267434a198cd7496a909905e09">
src/hdmf/build/classgenerator.py
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<h4>Changes:</h4>
<li id="7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
<a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: hdmf</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 2.5.<span class="idiff left right">6</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 2.5.<span class="idiff left right">7</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: A package for standardizing hierarchical object data</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/hdmf-dev/hdmf</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Andrew Tritt</span>
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<li id="9b0869c9ecbb8a6f13e0602b6bff34190dec2598">
<a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d#9b0869c9ecbb8a6f13e0602b6bff34190dec2598"><strong>src/hdmf.egg-info/PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: hdmf</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 2.5.<span class="idiff left right">6</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 2.5.<span class="idiff left right">7</span></span>
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4
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: A package for standardizing hierarchical object data</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/hdmf-dev/hdmf</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Andrew Tritt</span>
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<li id="ba66a4d062f6b50b4f5b0c916099b2f2e9ba2d43">
<a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d#ba66a4d062f6b50b4f5b0c916099b2f2e9ba2d43"><strong>src/hdmf/_version.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,11 +8,11 @@ import json</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="n" style="color: #333;">version_json</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'''</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="s" style="color: #d14;">{</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="python"><span class="s" style="color: #d14;"> "date": "2021-0<span class="idiff left right">5-24T10:39:2</span>1-0700",</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="s" style="color: #d14;"> "date": "2021-0<span class="idiff left right">6-04T18:02:0</span>1-0700",</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="s" style="color: #d14;"> "dirty": false,</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"><span class="s" style="color: #d14;"> "error": null,</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"><span class="s" style="color: #d14;"> "full-revisionid": "<span class="idiff left right">f983e800097450c912c72341695394b9aa61f816</span>",</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="s" style="color: #d14;"> "version": "2.5.<span class="idiff left right">6</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="s" style="color: #d14;"> "full-revisionid": "<span class="idiff left right">1b084d56ca66d73ed05fd83b5657c0824f4b72c5</span>",</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="s" style="color: #d14;"> "version": "2.5.<span class="idiff left right">7</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="s" style="color: #d14;">}</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"><span class="s" style="color: #d14;">'''</span> <span class="c1" style="color: #998; font-style: italic;"># END VERSION_JSON</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d#a999f3c1bdf8d2700a51a304c56e4e011c54c16f"><strong>src/hdmf/build/__init__.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.builders</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Builder</span><span class="p">,</span> <span class="n" style="color: #333;">DatasetBuilder</span><span class="p">,</span> <span class="n" style="color: #333;">GroupBuilder</span><span class="p">,</span> <span class="n" style="color: #333;">LinkBuilder</span><span class="p">,</span> <span class="n" style="color: #333;">ReferenceBuilder</span><span class="p">,</span> <span class="n" style="color: #333;">RegionBuilder</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.classgenerator</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">CustomClassGenerator</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.classgenerator</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">CustomClassGenerator</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">MCIClassGenerator</span></span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.errors</span> <span class="kn" style="font-weight: 600;">import</span> <span class="p">(</span><span class="n" style="color: #333;">BuildError</span><span class="p">,</span> <span class="n" style="color: #333;">OrphanContainerBuildError</span><span class="p">,</span> <span class="n" style="color: #333;">ReferenceTargetNotBuiltError</span><span class="p">,</span> <span class="n" style="color: #333;">ContainerConfigurationError</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"> <span class="n" style="color: #333;">ConstructError</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.manager</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">BuildManager</span><span class="p">,</span> <span class="n" style="color: #333;">TypeMap</span></span>
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<a href="https://salsa.debian.org/med-team/hdmf/-/commit/389da78e3fc75953d113f189c1c256b20ef9af6d#c7265cb3d8504f267434a198cd7496a909905e09"><strong>src/hdmf/build/classgenerator.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -268,9 +268,10 @@ class CustomClassGenerator:</td>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="python"><span class="s" style="color: #d14;"> :param spec: The spec for the container class to generate.</span></span>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># convert classdict['__fields__'] from list to tuple if present</span></span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="python"> <span class="n" style="color: #333;">fields</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">classdict</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">bases</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">_fieldsname</span><span class="p">)</span></span>
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272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">fields</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="python"> <span class="n" style="color: #333;">classdict</span><span class="p">[</span><span class="n" style="color: #333;">bases</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">_fieldsname</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">fields</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">b</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">bases</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python"> <span class="n" style="color: #333;">fields</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">classdict</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">_fieldsname</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">fields</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span> <span class="ow" style="font-weight: 600;">and</span> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">fields</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="python"> <span class="n" style="color: #333;">classdict</span><span class="p">[</span><span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">_fieldsname</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">fields</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># if spec provides a fixed name for this type, remove the 'name' arg from docval_args so that values cannot</span></span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># be passed for a name positional or keyword arg</span></span>
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