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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/mcaller">Debian Med / mcaller</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056">e32f3b56</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-06-21T13:58:42+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Minor change in run-unit-test
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<h4>1 changed file:</h4>
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,11 +15,11 @@ cp -a ${CUR_DIR}/testdata "${AUTOPKGTEST_TMP}"</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> model_data</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">CUR_DIR</span><span class="k" style="font-weight: 600;">}</span>/<span class="k" style="font-weight: 600;">*</span>pkl <span class="idiff left right">model_data</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">CUR_DIR</span><span class="k" style="font-weight: 600;">}</span>/<span class="k" style="font-weight: 600;">*</span><span class="idiff left">.</span>pkl <span class="nb" style="color: #0086b3;"><span class="idiff right">.</span></span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions_A.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-d</span> <span class="idiff left right">model_data/</span>r95_twobase_model_NN_6_m6A.pkl <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<td class="old_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions_m6A.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-d</span> <span class="idiff left right">model_data/</span>r95_twobase_model_NN_6_m6A.pkl <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<td class="old_line diff-line-num old" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-t</span> 4 <span class="nt" style="color: #000080;">--train</span> <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions_A.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-d</span> r95_twobase_model_NN_6_m6A.pkl <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions_m6A.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-d</span> r95_twobase_model_NN_6_m6A.pkl <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell">mCaller <span class="nt" style="color: #000080;">-p</span> testdata/test_positions.txt <span class="nt" style="color: #000080;">-r</span> testdata/pb_ecoli_polished_assembly.fasta <span class="nt" style="color: #000080;"><span class="idiff left">-d</span></span><span class="idiff right"> r95_twobase_model_NN_6_m6A.pkl </span><span class="nt" style="color: #000080;">-e</span> testdata/masonread1.eventalign.tsv <span class="nt" style="color: #000080;">-t</span> 4 <span class="nt" style="color: #000080;">--train</span> <span class="nt" style="color: #000080;">-f</span> testdata/masonread1.fastq</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-rf</span> model_data</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-rf</span> testdata</span>
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