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<h3>
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/945a455b59eb28308d85d40ba5c06212687b217a">945a455b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-06-27T09:55:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.791+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#10df4e85b149f158f222f2e3b6657393a168d6a6">
contrib/build_igzip.sh
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<li class="file-stats">
<a href="#69caa8fdb91e88b3651ae37841ef301dd6b9411a">
libmaus2.pc.in
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
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<li class="file-stats">
<a href="#cba616b4aafab7206a181f459f04fa028ba20c16">
src/libmaus2/LibMausConfig.hpp.in
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<li class="file-stats">
<a href="#3e7587d311ee1c4f4ce78ad964baa1243bc0294c">
src/libmaus2/aio/CircularBuffer.hpp
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<li class="file-stats">
<a href="#14ca54cc1eebb733cacc5542f0b6de44706175f5">
src/libmaus2/aio/CircularWrapper.hpp
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<li class="file-stats">
<a href="#968840aea65e37b6646383b2a96b8c13b1e29720">
src/libmaus2/aio/OutputStreamFactoryContainer.hpp
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<li class="file-stats">
<a href="#bd763f31b698f4e8a9c0b5fb6205c8f754241645">
src/libmaus2/autoarray/AutoArray.hpp
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<li class="file-stats">
<a href="#1a337f4d4106527d6453f67ce520c418907fe5ba">
src/libmaus2/bambam/BamAlignment.hpp
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<li class="file-stats">
<a href="#bf4edbc0b2bc540d9e3359fc75668cb3fec6c2c9">
src/libmaus2/bambam/BamAlignmentDecoderBase.hpp
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<li class="file-stats">
<a href="#801bf265cc456187050b0d4ccae1fb3b1150a397">
src/libmaus2/bambam/BamAlignmentDecoderFactory.hpp
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<li class="file-stats">
<a href="#e8500803b89251e092ea860b4aaa7be7e27028c4">
src/libmaus2/bambam/BamAlignmentDecoderInfo.hpp
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<li class="file-stats">
<a href="#967bf21c2f7e7727a800c8ec49a23cb41a737eee">
src/libmaus2/bambam/BamAlignmentReg2Bin.hpp
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<li class="file-stats">
<a href="#6f4c9cd04de86166a9ee98122b80eb9ccd7323bc">
src/libmaus2/bambam/BamHeaderLowMem.hpp
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<li class="file-stats">
<a href="#0b65d4d075b980f2cac0cd95462f534b8fc3b6ff">
src/libmaus2/bambam/HeaderLine.hpp
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<li class="file-stats">
<a href="#d8ab60bfa7d4d09ce24c9ee93d1088e7d5a80c7e">
src/libmaus2/bambam/Scram.c
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<li class="file-stats">
<a href="#8ab332b74ba7f6a62ab0b48431d6c7855738b467">
src/libmaus2/bambam/Scram.h
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<li class="file-stats">
<a href="#b811fc622b94120e524f8332482ef208287d2f65">
src/libmaus2/bambam/ScramDecoder.hpp
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<li class="file-stats">
<a href="#b67c5b0a90359916c6bab580f29505f590a1ec6f">
<span class="new-file">
+
src/libmaus2/bed/BED.hpp
</span>
</a>
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<li class="file-stats">
<a href="#9f52f11ea5f82dcfd7eb8db078336cd98e298ae4">
src/libmaus2/fastx/FastABgzfIndex.hpp
</a>
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<li class="file-stats">
<a href="#9f663e380266b1d6a0d26afe7f1fb5da77cc7c53">
src/libmaus2/gtf/GTFData.hpp
</a>
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<li class="file-stats">
<a href="#51e7b0b31ff1ed18c6ccf09109486269aaac6670">
src/libmaus2/lcs/AlignmentPrint.hpp
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</li>
<li class="file-stats">
<a href="#01f99a24fa1f7e8a49e87980e7fde51528e8b68c">
src/libmaus2/lcs/AlignmentTraceContainer.hpp
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</li>
<li class="file-stats">
<a href="#aab0195a54e020466fe2964904b5fbac1d7f089f">
<span class="new-file">
+
src/libmaus2/lcs/NPLSelf.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#78832f9403ee20c02d69e005f3092dcb4b6e441c">
<span class="new-file">
+
src/libmaus2/lz/BgzfChunkInputStream.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#8b8acbc651d6ea31cb7e9fa1f2b3b6cced9dd1cb">
<span class="new-file">
+
src/libmaus2/lz/BgzfChunkInputStreamBuffer.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9ac0cd54b0607446284ae17470db9c3a341d7c30">
src/libmaus2/lz/BgzfInflate.hpp
</a>
</li>
<li class="file-stats">
<a href="#b83a7f3d8ae7fe0378db2841320fd27e6104c8e1">
src/libmaus2/lz/BgzfInflateBase.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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