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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356">08a7b301</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-06-29T13:42:20+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 29 Jun 2021 <span class="idiff left right">0</span>1:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 29 Jun 2021 1<span class="idiff left right">3</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">68</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right">86</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">4</span> | {oncology,laboratory,imaging,covid-19,his,practice} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">6</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> openslide | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicomscope | <span class="idiff left right">19</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dcm2niix | 1<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> odin | 1<span class="idiff left right">5</span> | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk</span> | 1<span class="idiff">4</span> | {<span class="idiff right">bio-dev} </span> | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> <span class="idiff left">orthanc-webviewer</span> | 1<span class="idiff">4</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 1<span class="idiff">3</span> | {<span class="idiff right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">73</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right">91</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">9</span> | {oncology,laboratory,imaging,covid-19,his,practice} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">8</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> openslide | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicomscope | <span class="idiff left right">20</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> dcm2niix | 1<span class="idiff left right">9</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> odin | 1<span class="idiff left right">7</span> | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 1<span class="idiff">5</span> | {<span class="idiff right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk </span> <span class="idiff"> </span>| 1<span class="idiff">5</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left">orthanc-webviewer</span> | 1<span class="idiff">5</span> | {<span class="idiff right">imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> <span class="idiff left">adun.app </span> | 1<span class="idiff">2</span> | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <span class="idiff left">invesalius</span> | 1<span class="idiff">3</span> | {<span class="idiff right">imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> gnumed-server | 12 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> dicomnifti | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> minc-tools | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> dicomnifti | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> nifticlib | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> pixelmed | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> openslide | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> busco | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> nifti2dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> salmid | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> biojava-live | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> mia | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> nifticlib | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> plastimatch | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> sight | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> biojava-live | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> king | 4 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> melting | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> mia | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> nipype | 4 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> oscar | 4 | {tools,data,practice} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> plastimatch | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> sight | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> treeview | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> beast-mcmc | 3 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,11 +64,8 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> embassy-domalign | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> emboss-explorer | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> king | 3 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> lagan | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> nipype | 3 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> obitools | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> spread-phy | 3 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,7 +88,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> libncl | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> mhap | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,6 +117,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> libmuscle | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> libpal-java | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> mauve-aligner | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> microbegps | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,6 +129,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> proalign | 1 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> pscan-chip | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> python-wdlparse | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> rambo-k | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> rdp-alignment | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -213,7 +214,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> python-epimodels | 0 | {epi} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> python-seqcluster | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> python-wdlparse | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<td class="old_line diff-line-num" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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