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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-leidenalg">Debian Med / python-leidenalg</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-leidenalg/-/commit/4786935478606d92349969037d66b85f715d2a76">47869354</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-03T19:03:00+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.8.6</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-leidenalg/-/commit/b5d3a03a4f4c3d9ef87650dd46a456a4a74af8e3">b5d3a03a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-03T19:03:03+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.8.6'
Update to upstream version '0.8.6'
with Debian dir 6aeb293a61121a59ddc0152fee2445bb18d47926</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-leidenalg/-/commit/9abc669c7c0416ec6b3563ba4906159530209430">9abc669c</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-03T19:22:46+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: Specify IGRAPH_EXTRA_INCLUDE_PATH for setup.py to pick up env variable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-leidenalg/-/commit/557c411f95fd324e71132edb1e066145e6dbd100">557c411f</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-03T19:27:22+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/tests/run-unit-test: Do not run autopkgtests in project root
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-leidenalg/-/commit/6961a5fd4911492de35b798dfb9459cb870ce91d">6961a5fd</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-03T19:28:41+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>21 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#fe77d5d1439f26e353a42bbd38dece2467ff6558">
.github/workflows/build.yml
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<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
CHANGELOG
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#447e8317ac30a8de69813d74ad3684c72495f871">
build-doc.yml
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#dc8702a851198c1a0377dd553e5286224f18fdfc">
include/pynterface.h
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<li class="file-stats">
<a href="#df698287e5b77f179bacf6dd224af6228d30cd89">
include/python_optimiser_interface.h
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<li class="file-stats">
<a href="#8543e74c32487c97d9a0180bca943faa532c7dc8">
include/python_partition_interface.h
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#8be9f5c9ee92445426df861001e8696d3995bc2e">
src/leidenalg/MutableVertexPartition.cpp
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<li class="file-stats">
<a href="#429584f2ebc99feaedce77b525aa6efb925013d8">
src/leidenalg/Optimiser.cpp
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<li class="file-stats">
<a href="#78c6fbb1910ebd8ab1cec4f123da2aa8192a78ab">
src/leidenalg/Optimiser.py
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<li class="file-stats">
<a href="#b1888443d7d072d9ecfef1668ed3fa7be86c2ff0">
src/leidenalg/SignificanceVertexPartition.cpp
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<li class="file-stats">
<a href="#5ff846900ade77e26af554acad1ddc06121efacd">
src/leidenalg/VertexPartition.py
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<li class="file-stats">
<a href="#d9f68bab7b03fe23a48f4863a4aea7c7c9e17ad4">
src/leidenalg/functions.py
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<li class="file-stats">
<a href="#20cc90ad498bc894ac6486de92cf12a71396c4d1">
src/leidenalg/python_optimiser_interface.cpp
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<li class="file-stats">
<a href="#11652f8f7245c5a4cff5917df223d5b59573727f">
src/leidenalg/python_partition_interface.cpp
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<li class="file-stats">
<a href="#411a97a2d1e80b496795370c037c3824250ed4bf">
tests/test_Optimiser.py
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<li class="file-stats">
<a href="#7be53e12c88e3e38db485dc349cf906778c4d01b">
tests/test_VertexPartition.py
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</ul>
<h4>Changes:</h4>
<li id="fe77d5d1439f26e353a42bbd38dece2467ff6558">
<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#fe77d5d1439f26e353a42bbd38dece2467ff6558"><strong>.github/workflows/build.yml</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,9 +8,10 @@ on:</td>
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<td class="old_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="yaml"> <span class="na" style="color: #008080;">branches</span><span class="pi">:</span></span>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">master</span></span>
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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="yaml"></span>
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<td class="old_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"></span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="yaml"><span class="na" style="color: #008080;">env</span><span class="pi">:</span></span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_TEST_REQUIRES</span><span class="pi">:</span> <span class="s" style="color: #d14;">ddt</span></span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_TEST_COMMAND</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">cd</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">{project}</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">&&</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">python</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">-m</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">unittest"</span></span>
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<td class="old_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_TEST_COMMAND</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">cd</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">{project}</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">&&</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">python</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">-m</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">unittest</span><span class="nv" style="color: #008080;"><span class="idiff left"> </span></span><span class="s" style="color: #d14;"><span class="idiff right">-v</span>"</span></span>
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_SKIP</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">cp27-*</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">pp27-*</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">cp35-*"</span></span>
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<td class="new_line diff-line-num" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="yaml"></span>
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<td class="old_line diff-line-num" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="yaml"><span class="na" style="color: #008080;">jobs</span><span class="pi">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -119,7 +120,7 @@ jobs:</td>
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<td class="new_line diff-line-num" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_BEFORE_BUILD</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">python</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">setup.py</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">build_c_core"</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_BUILD</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">*-${{</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">matrix.wheel_arch</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">}}"</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="yaml"> <span class="na" style="color: #008080;">IGRAPH_CMAKE_EXTRA_ARGS</span><span class="pi">:</span> <span class="s" style="color: #d14;">-DCMAKE_BUILD_TYPE=Release -A ${{ matrix.cmake_arch }}</span></span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_TEST_COMMAND</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">cd</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">/d</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">{project}</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">&&</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">python</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">-m</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">unittest"</span></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="yaml"> <span class="na" style="color: #008080;">CIBW_TEST_COMMAND</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">cd</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">/d</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">{project}</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">&&</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">python</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">-m</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">unittest</span><span class="nv" style="color: #008080;"><span class="idiff left"> </span></span><span class="s" style="color: #d14;"><span class="idiff right">-v</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/upload-artifact@v2</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -163,7 +164,7 @@ jobs:</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Test</span></span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="pi">|</span></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="yaml"> <span class="s" style="color: #d14;">pip install ddt</span></span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="yaml"> <span class="s" style="color: #d14;">python -m unittest</span></span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="yaml"> <span class="s" style="color: #d14;">python -m unittest<span class="idiff left right"> -v</span></span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/upload-artifact@v2</span></span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,7 +175,6 @@ jobs:</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="yaml"> <span class="na" style="color: #008080;">runs-on</span><span class="pi">:</span> <span class="s" style="color: #d14;">ubuntu-latest</span></span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="yaml"> <span class="c1" style="color: #998; font-style: italic;"># upload to PyPI on every push from the master branch</span></span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">github.event_name == 'push' &&</span></span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="yaml"> <span class="s" style="color: #d14;">github.ref == 'refs/heads/master' &&</span></span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="yaml"> <span class="s" style="color: #d14;">startsWith(github.ref, 'refs/tags')</span></span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/download-artifact@v2</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a"><strong>CHANGELOG</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">0.8.6</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">- Removed accidentally left DEBUG statement</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">0.8.5</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">- Corrected iterating over nodes (PR #70).</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">- Fixed segfault with move_nodes_constrained (issue #68)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">- Fixed problem with initial_membership (issue #66)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">0.8.4</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">- Update C core to 0.9.1</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">- Fixed caching problem (issue #62)</span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,13 +18,14 @@ assignments remain fixed [10]_. It also provides some support for community</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"><span class="s1" style="color: #d14;">detection on bipartite graphs. See the `documentation</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"><span class="s1" style="color: #d14;"><http://leidenalg.readthedocs.io/en/latest/>`_ for more information.</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"><span class="s1" style="color: #d14;">.. image:: https://readthedocs.org/projects/leidenalg/badge</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :target: http://leidenalg.readthedocs.io/en/latest/</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :alt: Leiden documentation status</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"><span class="s1" style="color: #d14;">.. image:: https://<span class="idiff left right">ci.appveyor.com/api/projects/status/26au75vj8iwq32qp?svg=true</span></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :target: https://<span class="idiff left right">ci.appveyor.com/project/vtraag/leidenalg</span></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :alt: Leiden build status (<span class="idiff left right">AppVeyor</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="mosel"><span class="s1" style="color: #d14;">.. image:: https://<span class="idiff left right">github.com/vtraag/leidenalg/actions/workflows/build.yml/badge.svg?branch=master</span></span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :target: https://<span class="idiff left right">github.com/vtraag/leidenalg/actions/workflows/build.yml</span></span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :alt: Leiden build status (<span class="idiff left right">GitHub Actions</span>)</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="mosel"><span class="s1" style="color: #d14;">.. image:: https://zenodo.org/badge/146722095.svg</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="mosel"><span class="s1" style="color: #d14;"> :target: https://zenodo.org/badge/latestdoi/146722095</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,7 +39,7 @@ Installation</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"><span class="s1" style="color: #d14;">------------</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"><span class="s1" style="color: #d14;">In short: ``pip install leidenalg``. All major platforms are supported on</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="mosel"><span class="s1" style="color: #d14;">Python>=3.<span class="idiff left right">5</span>, earlier versions of Python are no longer supported. Alternatively,</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="mosel"><span class="s1" style="color: #d14;">Python>=3.<span class="idiff left right">6</span>, earlier versions of Python are no longer supported. Alternatively,</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"><span class="s1" style="color: #d14;">you can install from Anaconda (channel ``conda-forge``).</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="mosel"><span class="s1" style="color: #d14;">For Unix like systems it is possible to install from source. For Windows this is</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -84,9 +85,18 @@ sure to then install the ``C`` core library from source before. Make sure you</td>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="mosel"><span class="s1" style="color: #d14;">Usage</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="mosel"><span class="s1" style="color: #d14;">-----</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="mosel"><span class="s1" style="color: #d14;">There is no standalone version of ``leidenalg``, and you will always need</span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="mosel"><span class="s1" style="color: #d14;">python to access it. There are no plans for developing a standalone version or</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="mosel"><span class="s1" style="color: #d14;">R support. So, use python. Please refer to the documentation for more details</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"><span class="s1" style="color: #d14;">There is no standalone version of ``leidenalg``, and you will always need python</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"><span class="s1" style="color: #d14;">to access it. There are no plans at the moment for developing a standalone</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"><span class="s1" style="color: #d14;">version or R support. However, there have been various efforts to port the</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"><span class="s1" style="color: #d14;">package to R. These typically do not offer all available functionality or have</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"><span class="s1" style="color: #d14;">some other limitations, but nonetheless may be very useful. The available ports</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"><span class="s1" style="color: #d14;">are:</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"><span class="s1" style="color: #d14;">- https://github.com/cole-trapnell-lab/leidenbase</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"><span class="s1" style="color: #d14;">- https://github.com/TomKellyGenetics/leiden</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"><span class="s1" style="color: #d14;">- https://github.com/kharchenkolab/leidenAlg</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"><span class="s1" style="color: #d14;">Please refer to the documentation for more details</span></span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="mosel"><span class="s1" style="color: #d14;">on function calls and parameters.</span></span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="mosel"><span class="s1" style="color: #d14;">This implementation is made for flexibility, but ``igraph`` nowadays also</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#447e8317ac30a8de69813d74ad3684c72495f871"><strong>build-doc.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,4 +11,5 @@ dependencies:</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">automake</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">flex</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">bison</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">libtool</span></span></pre>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">libtool</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">cmake</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-leidenalg (0.8.6-1) unstable; urgency=medium</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version 0.8.6</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/rules: Specify IGRAPH_EXTRA_INCLUDE_PATH</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> for setup.py to pick up env variable</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * d/tests/run-unit-test: Do not run autopkgtests in project root</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sat, 03 Jul 2021 19:28:17 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">python-leidenalg (0.8.4-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> [ Shruti Sridhar ]</span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,6 +5,7 @@ DH_VERBOSE := 1</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">export PYBUILD_NAME=leidenalg</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">export IGRAPH_EXTRA_INCLUDE_PATH=/usr/include/igraph</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span></pre>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>py <span class="k" style="font-weight: 600;">in</span> <span class="si" style="color: #d14;">$(</span>py3versions <span class="nt" style="color: #000080;">-r</span> 2> /dev/null<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">CUR_DIR</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">pwd</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">CUR_DIR</span><span class="k" style="font-weight: 600;">}</span>/tests/ <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>py <span class="k" style="font-weight: 600;">in</span> <span class="si" style="color: #d14;">$(</span>py3versions <span class="nt" style="color: #000080;">-s</span> 2> /dev/null<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span> </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"> </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"> <span class="nv" style="color: #008080;">$py</span> <span class="nt" style="color: #000080;">-m</span> pytest <span class="nt" style="color: #000080;">-v</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#dc8702a851198c1a0377dd553e5286224f18fdfc"><strong>include/pynterface.h</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifndef PYNTERFACE_H_INCLUDED</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PYNTERFACE_H_INCLUDED</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <Python.h></span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <igraph.h></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "GraphHelper.h"</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,14 +86,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">error</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="c"> <span class="p">};</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#define GETSTATE(m) ((struct module_state*)PyModule_GetState(m))</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#define GETSTATE(m) (&_state)</span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">module_state</span> <span class="n" style="color: #333;">_state</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">leiden_traverse</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">,</span> <span class="n" style="color: #333;">visitproc</span> <span class="n" style="color: #333;">visit</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">arg</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="c"> <span class="n" style="color: #333;">Py_VISIT</span><span class="p">(</span><span class="n" style="color: #333;">GETSTATE</span><span class="p">(</span><span class="n" style="color: #333;">m</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">error</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,19 +114,8 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="c"> <span class="n" style="color: #333;">PyInit__c_leiden</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#define INITERROR return</span></span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span></span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="c"> <span class="n" style="color: #333;">init_c_leiden</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">module</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyModule_Create</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">leidendef</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">module</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Py_InitModule3</span><span class="p">(</span><span class="s" style="color: #d14;">"_c_leiden"</span><span class="p">,</span> <span class="n" style="color: #333;">leiden_funcs</span><span class="p">,</span> <span class="s" style="color: #d14;">"Leiden extension using igraph."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="c"> <span class="n" style="color: #333;">PyModule_AddIntConstant</span><span class="p">(</span><span class="n" style="color: #333;">module</span><span class="p">,</span> <span class="s" style="color: #d14;">"ALL_COMMS"</span><span class="p">,</span> <span class="n" style="color: #333;">Optimiser</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ALL_COMMS</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="c"> <span class="n" style="color: #333;">PyModule_AddIntConstant</span><span class="p">(</span><span class="n" style="color: #333;">module</span><span class="p">,</span> <span class="s" style="color: #d14;">"ALL_NEIGH_COMMS"</span><span class="p">,</span> <span class="n" style="color: #333;">Optimiser</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -157,9 +135,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="c"> <span class="n" style="color: #333;">INITERROR</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">module</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="c"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __cplusplus</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#df698287e5b77f179bacf6dd224af6228d30cd89"><strong>include/python_optimiser_interface.h</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifndef PYNTERFACE_OPTIMISER_H_INCLUDED</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define PYNTERFACE_OPTIMISER_H_INCLUDED</span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define IS_PY3K</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <Python.h></span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <igraph.h></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include "GraphHelper.h"</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#8543e74c32487c97d9a0180bca943faa532c7dc8"><strong>include/python_partition_interface.h</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifndef PYNTERFACE_PARTITION_H_INCLUDED</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define PYNTERFACE_PARTITION_H_INCLUDED</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <Python.h></span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <igraph.h></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include "GraphHelper.h"</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +27,8 @@ Graph* create_graph_from_py(PyObject* py_obj_graph, PyObject* py_node_sizes);</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">create_graph_from_py</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_node_sizes</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_weights</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"><span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">create_graph_from_py</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_node_sizes</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_weights</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">check_positive_weight</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_list</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="cpp"><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">capsule_MutableVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">partition</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="cpp"><span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">decapsule_MutableVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_partition</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,13 +35,6 @@ from time import sleep</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">###########################################################################</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python"><span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_INCLUDE_DIRS</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"/usr/include/igraph"</span><span class="p">,</span> <span class="s" style="color: #d14;">"/usr/local/include/igraph"</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"><span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARIES</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"igraph"</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"><span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARY_DIRS</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">###########################################################################</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"><span class="n" style="color: #333;">is_windows</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">platform</span><span class="p">.</span><span class="n" style="color: #333;">system</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"windows"</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -300,6 +293,7 @@ class BuildConfiguration(object):</td>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">define_macros</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">extra_objects</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">static_extension</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">external</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">use_pkgconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_has_pkgconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">excluded_include_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -369,13 +363,16 @@ class BuildConfiguration(object):</td>
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Check whether the user asked us to discover a pre-built igraph</span></span>
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<pre style="margin: 0;"> <span id="LC364" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># with pkg-config</span></span>
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<pre style="margin: 0;"> <span id="LC365" class="line" lang="python"> <span class="n" style="color: #333;">detected</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">use_pkgconfig</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="python"> <span class="n" style="color: #333;">detected</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">detect_from_pkgconfig</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">detected</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="python"> <span class="s" style="color: #d14;">"Cannot find the C core of igraph on this system using pkg-config."</span></span>
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="nb" style="color: #0086b3;">exit</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">external</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">use_pkgconfig</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="python"> <span class="n" style="color: #333;">detected</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">detect_from_pkgconfig</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">detected</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="python"> <span class="s" style="color: #d14;">"Cannot find the C core of igraph on this system using pkg-config."</span></span>
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="nb" style="color: #0086b3;">exit</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="python"> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">use_educated_guess</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Build the C core from the vendored igraph source</span></span>
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">run_command</span><span class="p">(</span><span class="s" style="color: #d14;">"build_c_core"</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -384,6 +381,14 @@ class BuildConfiguration(object):</td>
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">detected</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="python"> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">use_educated_guess</span><span class="p">()</span></span>
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383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add any extra include paths if needed; this is needed for the</span></span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Appveyor CI build</span></span>
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"IGRAPH_EXTRA_INCLUDE_PATH"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">environ</span><span class="p">:</span></span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="python"> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">include_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="python"> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">environ</span><span class="p">[</span><span class="s" style="color: #d14;">"IGRAPH_EXTRA_INCLUDE_PATH"</span><span class="p">].</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">pathsep</span><span class="p">))</span></span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="python"> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">include_dirs</span></span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="python"> <span class="p">)</span></span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add any extra library paths if needed; this is needed for the</span></span>
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Appveyor CI build</span></span>
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"IGRAPH_EXTRA_LIBRARY_PATH"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">environ</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -649,6 +654,9 @@ class BuildConfiguration(object):</td>
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649
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654
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<pre style="margin: 0;"> <span id="LC654" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">option</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"--no-wait"</span><span class="p">:</span></span>
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650
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655
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<pre style="margin: 0;"> <span id="LC655" class="line" lang="python"> <span class="n" style="color: #333;">opts_to_remove</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">idx</span><span class="p">)</span></span>
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651
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656
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<pre style="margin: 0;"> <span id="LC656" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">wait</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">option</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"--external"</span><span class="p">:</span></span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="python"> <span class="n" style="color: #333;">opts_to_remove</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">idx</span><span class="p">)</span></span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">external</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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652
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660
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<pre style="margin: 0;"> <span id="LC660" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">option</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"--use-pkg-config"</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC661" class="line" lang="python"> <span class="n" style="color: #333;">opts_to_remove</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">idx</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC662" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">use_pkgconfig</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -709,34 +717,25 @@ class BuildConfiguration(object):</td>
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<pre style="margin: 0;"> <span id="LC717" class="line" lang="python"> <span class="n" style="color: #333;">buildcfg</span><span class="p">.</span><span class="n" style="color: #333;">libraries</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">eval</span><span class="p">(</span><span class="n" style="color: #333;">buildcfg_file</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">"r"</span><span class="p">).</span><span class="n" style="color: #333;">read</span><span class="p">())</span></span>
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<pre style="margin: 0;"> <span id="LC718" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC719" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">use_educated_guess</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC712" class="line" lang="python"> <span class="s" style="color: #d14;">"""Tries to guess the proper library names, include and library paths</span></span>
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<pre style="margin: 0;">-<span id="LC713" class="line" lang="python"><span class="s" style="color: #d14;"> if everything else failed."""</span></span>
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<pre style="margin: 0;">-<span id="LC714" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC715" class="line" lang="python"> <span class="k" style="font-weight: 600;">global</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARIES</span></span>
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<pre style="margin: 0;">-<span id="LC716" class="line" lang="python"> <span class="k" style="font-weight: 600;">global</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_INCLUDE_DIRS</span></span>
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<pre style="margin: 0;">-<span id="LC717" class="line" lang="python"> <span class="k" style="font-weight: 600;">global</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARY_DIRS</span></span>
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<pre style="margin: 0;">-<span id="LC718" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC719" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"WARNING: we were not able to detect where igraph is installed on"</span><span class="p">)</span></span>
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720
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<pre style="margin: 0;">-<span id="LC720" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"your machine (if it is installed at all). We will use the fallback"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC721" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"library and include paths hardcoded in setup.py and hope that the"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC722" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"C core of igraph is installed there."</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC723" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC724" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"If the compilation fails and you are sure that igraph is installed"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC725" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"on your machine, adjust the following two variables in setup.py"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC726" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"accordingly and try again:"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"- LIBIGRAPH_FALLBACK_INCLUDE_DIRS"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC729" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"- LIBIGRAPH_FALLBACK_LIBRARY_DIRS"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC730" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC731" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC732" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">wait</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC733" class="line" lang="python"> <span class="n" style="color: #333;">wait_for_keypress</span><span class="p">(</span><span class="n" style="color: #333;">seconds</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10</span><span class="p">)</span></span>
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734
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC735" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">libraries</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARIES</span><span class="p">[:]</span></span>
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736
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<pre style="margin: 0;">-<span id="LC736" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">static_extension</span><span class="p">:</span></span>
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737
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">libraries</span><span class="p">.</span><span class="n" style="color: #333;">extend</span><span class="p">([</span><span class="s" style="color: #d14;">"xml2"</span><span class="p">,</span> <span class="s" style="color: #d14;">"z"</span><span class="p">,</span> <span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="s" style="color: #d14;">"stdc++"</span><span class="p">])</span></span>
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<pre style="margin: 0;">-<span id="LC738" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">include_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_INCLUDE_DIRS</span><span class="p">[:]</span></span>
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739
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<pre style="margin: 0;">-<span id="LC739" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">library_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">LIBIGRAPH_FALLBACK_LIBRARY_DIRS</span><span class="p">[:]</span></span>
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="python"> <span class="s" style="color: #d14;">"""Tries to guess the proper library names, include and library paths."""</span></span>
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<pre style="margin: 0;">+<span id="LC721" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC722" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"""WARNING: You are trying to install with an external igraph library.</span></span>
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<pre style="margin: 0;">+<span id="LC723" class="line" lang="python"><span class="s" style="color: #d14;">No include dirs or library dirs are specified, so they need to be set externally.</span></span>
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<pre style="margin: 0;">+<span id="LC724" class="line" lang="python"><span class="s" style="color: #d14;">If compilation fails you may adjust the following environment variables to adjust</span></span>
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725
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="python"><span class="s" style="color: #d14;">the required paths.</span></span>
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="python"><span class="s" style="color: #d14;">- IGRAPH_EXTRA_INCLUDE_PATH</span></span>
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727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="python"><span class="s" style="color: #d14;">- IGRAPH_EXTRA_LIBRARY_PATH</span></span>
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="python"><span class="s" style="color: #d14;">- IGRAPH_EXTRA_LIBRARIES</span></span>
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="python"><span class="s" style="color: #d14;">- IGRAPH_EXTRA_DYNAMIC_LIBRARIES</span></span>
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730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="python"></span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="python"><span class="s" style="color: #d14;">If a static build extension is used, we try to statically link to igraph. The extra</span></span>
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732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="python"><span class="s" style="color: #d14;">libraries that are specified are then also assumed to be statically linked. If, in</span></span>
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="python"><span class="s" style="color: #d14;">addition, some libraries need to be explicitly dynamically linked, you can specify this.</span></span>
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="python"><span class="s" style="color: #d14;"> """</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">libraries</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">'igraph'</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">include_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">library_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC739" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC740" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC741" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">###########################################################################</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#8be9f5c9ee92445426df861001e8696d3995bc2e"><strong>src/leidenalg/MutableVertexPartition.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -373,7 +373,7 @@ vector<size_t> MutableVertexPartition::rank_order_communities(vector<MutableVert</td>
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC374" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;"> <span id="LC375" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">vcount</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">layer</span><span class="p">;</span> <span class="n" style="color: #333;">layer</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nb_layers</span><span class="p">;</span> <span class="n" style="color: #333;">layer</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">layer</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="p">;</span> <span class="n" style="color: #333;">layer</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nb_layers</span><span class="p">;</span> <span class="n" style="color: #333;">layer</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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379
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="cpp"> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#429584f2ebc99feaedce77b525aa6efb925013d8"><strong>src/leidenalg/Optimiser.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,7 @@ Optimiser::Optimiser()</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">this</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_comm_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_rng_init</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">rng</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">igraph_rngtype_mt19937</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_rng_seed</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">rng</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">rand</span></span><span class="p"><span class="idiff right">(</span>));</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_rng_seed</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">rng</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">time</span></span><span class="p"><span class="idiff">(</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">NULL</span></span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="cpp"><span class="n" style="color: #333;">Optimiser</span><span class="o" style="font-weight: 600;">::~</span><span class="n" style="color: #333;">Optimiser</span><span class="p">()</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -563,8 +563,6 @@ double Optimiser::move_nodes(vector<MutableVertexPartition*> partitions, vector<</td>
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC564" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">front</span><span class="p">();</span> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">pop_front</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC565" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="cpp"> <span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="cpp"> <span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// What is the current community of the node (this should be the same for all layers)</span></span>
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v_comm</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC568" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -623,17 +621,15 @@ double Optimiser::move_nodes(vector<MutableVertexPartition*> partitions, vector<</td>
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Check if we should move to an empty community</span></span>
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">consider_empty_community</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC623" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC626" class="line" lang="cpp"> <span class="n" style="color: #333;">graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">graphs</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC627" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC628" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cnodes</span><span class="p">(</span><span class="n" style="color: #333;">v_comm</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">1</span> <span class="p">)</span> <span class="c1" style="color: #998; font-style: italic;">// We should not move a node when it is already in its own empty community (this may otherwise create more empty communities than nodes)</span></span>
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cnodes</span><span class="p">(</span><span class="n" style="color: #333;">v_comm</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">1</span> <span class="p">)</span> <span class="c1" style="color: #998; font-style: italic;">// We should not move a node when it is already in its own empty community (this may otherwise create more empty communities than nodes)</span></span>
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<pre style="margin: 0;"> <span id="LC625" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n_comms</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n_communities</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC631" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">comm</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">get_empty_community</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n_comms</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition<span class="idiff left">s</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n_communities</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">comm</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition<span class="idiff left">s</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">get_empty_community</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC633" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Checking empty community ("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">comm</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">") for partition "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Checking empty community ("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">comm</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">") for partition "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">partition<span class="idiff left">s</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC630" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC631" class="line" lang="cpp"> <span class="n" style="color: #333;">comms</span><span class="p">.</span><span class="n" style="color: #333;">push_back</span><span class="p">(</span><span class="n" style="color: #333;">comm</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n_communities</span><span class="p">()</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">n_comms</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">partition<span class="idiff left">s</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n_communities</span><span class="p">()</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">n_comms</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC633" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC634" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If the empty community has just been added, we need to make sure</span></span>
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<pre style="margin: 0;"> <span id="LC635" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// that is has also been added to the other layers</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -726,15 +722,18 @@ double Optimiser::move_nodes(vector<MutableVertexPartition*> partitions, vector<</td>
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<pre style="margin: 0;"> <span id="LC722" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC724" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Mark neighbours as unstable (if not in new community and not fixed)</span></span>
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<pre style="margin: 0;">-<span id="LC729" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left">size_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">u</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">graph</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">get_neighbours</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">v</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">IGRAPH_ALL</span></span><span class="p"><span class="idiff right">)</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">Graph</span></span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">graph</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">graphs</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC726" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC731" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If the neighbour was stable and is not in the new community, we</span></span>
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<pre style="margin: 0;">-<span id="LC732" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// should mark it as unstable, and add it to the queue, skipping</span></span>
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<pre style="margin: 0;">-<span id="LC733" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// fixed nodes</span></span>
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">max_comm</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">is_membership_fixed</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">u</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">get_neighbours</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">IGRAPH_ALL</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC728" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC736" class="line" lang="cpp"> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">push_back</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="cpp"> <span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If the neighbour was stable and is not in the new community, we</span></span>
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// should mark it as unstable, and add it to the queue, skipping</span></span>
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// fixed nodes</span></span>
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">max_comm</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">is_membership_fixed</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="cpp"> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">push_back</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="cpp"> <span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC737" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC738" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC739" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Keep track of number of moves</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1050,8 +1049,6 @@ double Optimiser::move_nodes_constrained(vector<MutableVertexPartition*> partiti</td>
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1049
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<pre style="margin: 0;"> <span id="LC1049" class="line" lang="cpp"> <span class="n" style="color: #333;">comm_added</span><span class="p">[</span><span class="n" style="color: #333;">comm</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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1051
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1050
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<pre style="margin: 0;"> <span id="LC1050" class="line" lang="cpp"> <span class="n" style="color: #333;">comms</span><span class="p">.</span><span class="n" style="color: #333;">clear</span><span class="p">();</span></span>
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1052
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1051
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<pre style="margin: 0;"> <span id="LC1051" class="line" lang="cpp"></span>
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1053
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<pre style="margin: 0;">-<span id="LC1053" class="line" lang="cpp"> <span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1054" class="line" lang="cpp"> <span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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1055
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1052
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<pre style="margin: 0;"> <span id="LC1052" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// What is the current community of the node (this should be the same for all layers)</span></span>
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1053
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<pre style="margin: 0;"> <span id="LC1053" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v_comm</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC1054" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1192,15 +1189,19 @@ double Optimiser::move_nodes_constrained(vector<MutableVertexPartition*> partiti</td>
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1192
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1189
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<pre style="margin: 0;"> <span id="LC1189" class="line" lang="cpp"> <span class="p">}</span></span>
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1190
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<pre style="margin: 0;"> <span id="LC1190" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1194
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1191
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<pre style="margin: 0;"> <span id="LC1191" class="line" lang="cpp"></span>
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1195
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<pre style="margin: 0;">-<span id="LC1195" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Mark neighbours as unstable (if not in new community)</span></span>
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1196
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<pre style="margin: 0;">-<span id="LC1196" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left">size_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">u</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">graph</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">get_neighbours</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">v</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">IGRAPH_ALL</span></span><span class="p"><span class="idiff right">)</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC1192" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Mark neighbours as unstable (if not in new community<span class="idiff left right"> and not fixed</span>)</span></span>
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1193
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<pre style="margin: 0;">+<span id="LC1193" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">Graph</span></span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">graph</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">graphs</span></span><span class="p">)</span></span>
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1197
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<pre style="margin: 0;"> <span id="LC1194" class="line" lang="cpp"> <span class="p">{</span></span>
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1198
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<pre style="margin: 0;">-<span id="LC1198" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If the neighbour was stable and is not in the new community, we</span></span>
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<pre style="margin: 0;">-<span id="LC1199" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// should mark it as unstable, and add it to the queue</span></span>
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<pre style="margin: 0;">-<span id="LC1200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">max_comm</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC1195" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">u</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">get_neighbours</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">IGRAPH_ALL</span><span class="p">))</span></span>
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1196
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<pre style="margin: 0;"> <span id="LC1196" class="line" lang="cpp"> <span class="p">{</span></span>
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1202
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<pre style="margin: 0;">-<span id="LC1202" class="line" lang="cpp"> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">push_back</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1203" class="line" lang="cpp"> <span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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1197
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<pre style="margin: 0;">+<span id="LC1197" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If the neighbour was stable and is not in the new community, we</span></span>
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1198
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<pre style="margin: 0;">+<span id="LC1198" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// should mark it as unstable, and add it to the queue, skipping</span></span>
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<pre style="margin: 0;">+<span id="LC1199" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// fixed nodes</span></span>
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1200
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<pre style="margin: 0;">+<span id="LC1200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">partitions</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">max_comm</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">constrained_partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">constrained_partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC1201" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1202" class="line" lang="cpp"> <span class="n" style="color: #333;">vertex_order</span><span class="p">.</span><span class="n" style="color: #333;">push_back</span><span class="p">(</span><span class="n" style="color: #333;">u</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC1203" class="line" lang="cpp"> <span class="n" style="color: #333;">is_node_stable</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1204" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC1205" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC1206" class="line" lang="cpp"> <span class="p">}</span></span>
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1207
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<pre style="margin: 0;"> <span id="LC1207" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#78c6fbb1910ebd8ab1cec4f123da2aa8192a78ab"><strong>src/leidenalg/Optimiser.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,10 +2,6 @@ from . import _c_leiden</td>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.VertexPartition</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">LinearResolutionParameterVertexPartition</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">collections</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">namedtuple</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">math</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">log</span><span class="p">,</span> <span class="n" style="color: #333;">sqrt</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Check if working with Python 3</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="n" style="color: #333;">PY3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">></span> <span class="s" style="color: #d14;">'3'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">Optimiser</span><span class="p">(</span><span class="nb" style="color: #0086b3;">object</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"> <span class="s" style="color: #d14;">""" Class for doing community detection using the Leiden algorithm.</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#b1888443d7d072d9ecfef1668ed3fa7be86c2ff0"><strong>src/leidenalg/SignificanceVertexPartition.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,8 +110,12 @@ double SignificanceVertexPartition::diff_move(size_t v, size_t new_comm)</td>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Calculate actual diff</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="cpp"> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_oldx</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_oldx</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_newx</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_newx</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_old</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_old</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_new</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_new</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">N_oldx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">N_new</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">q_oldx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">q_new</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cpp"> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_oldx</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_oldx</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_new</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_new</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">N_newx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">N_old</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">q_newx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">q_old</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_newx</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_newx</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span><span class="n" style="color: #333;">N_old</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">KLL</span><span class="p">(</span><span class="n" style="color: #333;">q_old</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"diff: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#5ff846900ade77e26af554acad1ddc06121efacd"><strong>src/leidenalg/VertexPartition.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">igraph</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">_ig</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">_c_leiden</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.functions</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">_get_py_capsule</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Check if working with Python 3</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">PY3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">></span> <span class="s" style="color: #d14;">'3'</span><span class="p">)</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">MutableVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">_ig</span><span class="p">.</span><span class="n" style="color: #333;">VertexClustering</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"> <span class="s" style="color: #d14;">""" Contains a partition of graph, derives from :class:`ig.VertexClustering`.</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#d9f68bab7b03fe23a48f4863a4aea7c7c9e17ad4"><strong>src/leidenalg/functions.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,14 +11,9 @@ from ._c_leiden import MERGE_NODES</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">collections</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Counter</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Check if working with Python 3</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="n" style="color: #333;">PY3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">></span> <span class="s" style="color: #d14;">'3'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_get_py_capsule</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">PY3</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">__graph_as_capsule</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">__graph_as_cobject</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">__graph_as_capsule</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.VertexPartition</span> <span class="kn" style="font-weight: 600;">import</span> <span class="o" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.Optimiser</span> <span class="kn" style="font-weight: 600;">import</span> <span class="o" style="font-weight: 600;">*</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#20cc90ad498bc894ac6486de92cf12a71396c4d1"><strong>src/leidenalg/python_optimiser_interface.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -404,11 +404,11 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC404" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC405" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Capsule constrained partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">py_partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Capsule constrained partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">py_<span class="idiff left right">constrained_</span>partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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408
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408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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409
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<pre style="margin: 0;"> <span id="LC409" class="line" lang="cpp"> <span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">constrained_partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">decapsule_MutableVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">py_constrained_partition</span><span class="p">);</span></span>
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410
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<pre style="margin: 0;"> <span id="LC410" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using constrained partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using constrained partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;"><span class="idiff left right">constrained_</span>partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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412
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412
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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413
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC414" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">consider_comms</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -545,11 +545,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using optimiser at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyLong_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">consider_comms</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyInt_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">consider_comms</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC551" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">_Optimiser_set_refine_consider_comms</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">self</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">keywds</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -609,11 +605,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC605" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using optimiser at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC606" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC607" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC612" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;"> <span id="LC608" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyLong_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">refine_consider_comms</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC614" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC615" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyInt_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">refine_consider_comms</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC609" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC610" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC611" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">_Optimiser_set_optimise_routine</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">self</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">keywds</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="665" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -673,11 +665,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC665" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using optimiser at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC666" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC667" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC676" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;"> <span id="LC668" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyLong_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">optimise_routine</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC678" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC679" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyInt_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">optimise_routine</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC680" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC669" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC670" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC671" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">_Optimiser_set_refine_routine</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">self</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">keywds</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -737,11 +725,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC725" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using optimiser at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC726" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC727" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC740" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;"> <span id="LC728" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyLong_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">refine_routine</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC742" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC743" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PyInt_FromLong</span><span class="p">(</span><span class="n" style="color: #333;">optimiser</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">refine_routine</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC744" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC729" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC730" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC731" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">_Optimiser_set_consider_empty_community</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">self</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">keywds</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#11652f8f7245c5a4cff5917df223d5b59573727f"><strong>src/leidenalg/python_partition_interface.cpp</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include "python_partition_interface.h"</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION >= 3</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"><span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">create_graph_from_py</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_node_sizes</span><span class="p">)</span></span>
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8
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">create_graph_from_py</span><span class="p">(</span><span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="n" style="color: #333;">py_node_sizes</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,11 +16,7 @@ Graph* create_graph_from_py(PyObject* py_obj_graph, PyObject* py_node_sizes, PyO</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"create_graph_from_py"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">PyCapsule_GetPointer</span><span class="p">(</span><span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">PyCObject_AsVoidPtr</span><span class="p">(</span><span class="n" style="color: #333;">py_obj_graph</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"> <span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">igraph_t</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">PyCapsule_GetPointer</span><span class="p">(</span><span class="n" style="color: #333;">py_obj_graph</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Got igraph_t "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">py_graph</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -55,13 +47,10 @@ Graph* create_graph_from_py(PyObject* py_obj_graph, PyObject* py_node_sizes, PyO</td>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_node_sizes</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="cpp"> <span class="n" style="color: #333;">node_sizes</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">e</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">PyNumber_Long</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="n" style="color: #333;">node_sizes</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">e</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,6 +124,27 @@ Graph* create_graph_from_py(PyObject* py_obj_graph, PyObject* py_node_sizes, PyO</td>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">graph</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="cpp"><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_list</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cpp"><span class="p">{</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_list</span><span class="p">);</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">result</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"> <span class="p">{</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_list</span><span class="p">,</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="new_line diff-line-num new" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">e</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">PyNumber_Long</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">));</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">e</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">"Value cannot exceed length of list."</span><span class="p">);</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cpp"> <span class="n" style="color: #333;">result</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">e</span><span class="p">;</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cpp"> <span class="p">}</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">"Value cannot exceed length of list."</span><span class="p">);</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"> <span class="p">}</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">result</span><span class="p">;</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cpp"><span class="p">}</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"></span>
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138
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="cpp"><span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="nf" style="color: #900; font-weight: 600;">capsule_MutableVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">MutableVertexPartition</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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139
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="cpp"><span class="p">{</span></span>
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140
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyCapsule_New</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="s" style="color: #d14;">"leidenalg.VertexPartition.MutableVertexPartition"</span><span class="p">,</span> <span class="n" style="color: #333;">del_MutableVertexPartition</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -180,34 +190,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">ModularityVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -255,34 +238,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -330,34 +286,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SurpriseVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -406,37 +335,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC335" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC336" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC337" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -485,34 +384,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC388" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC389" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">RBERVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -561,34 +433,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// If necessary create an initial partition</span></span>
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_initial_membership</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Reading initial membership."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC573" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC575" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC576" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC577" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC578" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC579" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC580" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC581" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC582" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="cpp"> <span class="n" style="color: #333;">initial_membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC589" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC591" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">initial_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_initial_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC437" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">RBConfigurationVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">initial_membership</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="663" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -663,11 +508,7 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">node_sizes</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_New</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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509
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC510" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC666" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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<pre style="margin: 0;">-<span id="LC667" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">node_size</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC668" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC669" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">node_size</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC670" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">node_size</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="cpp"> <span class="n" style="color: #333;">PyList_SetItem</span><span class="p">(</span><span class="n" style="color: #333;">node_sizes</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">item</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -695,30 +536,19 @@ extern "C"</td>
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<pre style="margin: 0;"> <span id="LC536" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"from_coarse_partition();"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC537" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC538" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC698" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC539" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">membership</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC700" class="line" lang="cpp"> <span class="n" style="color: #333;">membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC701" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC703" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC704" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC705" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC706" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC707" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC708" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC709" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC710" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC712" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC713" class="line" lang="cpp"> <span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC714" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC715" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC716" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC717" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC718" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC719" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="cpp"> <span class="n" style="color: #333;">membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span> <span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">e</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="cpp"> <span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Could not create membership vector: "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">string</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">.</span><span class="n" style="color: #333;">what</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_BaseException</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC552" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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553
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<pre style="margin: 0;"> <span id="LC553" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Capsule partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">py_partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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554
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -731,33 +561,18 @@ extern "C"</td>
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561
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="cpp"></span>
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562
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<pre style="margin: 0;"> <span id="LC562" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">py_coarse_node</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">py_coarse_node</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">Py_None</span><span class="p">)</span></span>
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563
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Get coarse node list"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC735" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_coarse_node</span><span class="p">);</span></span>
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736
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564
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<pre style="margin: 0;"> <span id="LC564" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">coarse_node</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="cpp"> <span class="n" style="color: #333;">coarse_node</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC738" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC740" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_coarse_node</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC741" class="line" lang="cpp"></span>
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<td class="new_line diff-line-num old" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC742" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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743
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<pre style="margin: 0;">-<span id="LC743" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC744" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC745" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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746
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<pre style="margin: 0;">-<span id="LC746" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Coarse node cannot exceed number of nodes."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC748" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC749" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC750" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC751" class="line" lang="cpp"> <span class="n" style="color: #333;">coarse_node</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC752" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC753" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC754" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC755" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for coarse vector."</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC756" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC757" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="cpp"> <span class="n" style="color: #333;">coarse_node</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_coarse_node</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span> <span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">e</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="cpp"> <span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Could not create coarse node vector: "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">string</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">.</span><span class="n" style="color: #333;">what</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_BaseException</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC574" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC575" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC760" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Got coarse node list"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC576" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">from_coarse_partition</span><span class="p">(</span><span class="n" style="color: #333;">membership</span><span class="p">,</span> <span class="n" style="color: #333;">coarse_node</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC577" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC578" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1072" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1257,11 +1072,7 @@ extern "C"</td>
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1257
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1072
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<pre style="margin: 0;"> <span id="LC1072" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_membership</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_New</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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1258
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1073
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<pre style="margin: 0;"> <span id="LC1073" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1259
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1074
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<pre style="margin: 0;"> <span id="LC1074" class="line" lang="cpp"> <span class="p">{</span></span>
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1260
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<td class="new_line diff-line-num old" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1260" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef IS_PY3K</span></span>
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1261
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<td class="new_line diff-line-num old" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1261" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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1262
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<td class="new_line diff-line-num old" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1262" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1263
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<td class="new_line diff-line-num old" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1263" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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1264
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<td class="new_line diff-line-num old" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1264" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1075
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<pre style="margin: 0;">+<span id="LC1075" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_FromSize_t</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">membership</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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1265
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<td class="new_line diff-line-num" data-linenumber="1076" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1076
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<pre style="margin: 0;"> <span id="LC1076" class="line" lang="cpp"> <span class="n" style="color: #333;">PyList_SetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">item</span><span class="p">);</span></span>
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1266
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1077
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<pre style="margin: 0;"> <span id="LC1077" class="line" lang="cpp"> <span class="p">}</span></span>
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1267
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1078
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<pre style="margin: 0;"> <span id="LC1078" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">py_membership</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1296,32 +1107,16 @@ extern "C"</td>
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1296
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1107
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<pre style="margin: 0;"> <span id="LC1107" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Using partition at address "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1297
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1108
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<pre style="margin: 0;"> <span id="LC1108" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1298
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1109
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<pre style="margin: 0;"> <span id="LC1109" class="line" lang="cpp"></span>
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1299
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<td class="new_line diff-line-num old" data-linenumber="1110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1299" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_Size</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">);</span></span>
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1300
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<td class="new_line diff-line-num old" data-linenumber="1110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1300" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">membership</span><span class="p">;</span></span>
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<td class="old_line diff-line-num old" data-linenumber="1301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1301
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<pre style="margin: 0;">-<span id="LC1301" class="line" lang="cpp"> <span class="n" style="color: #333;">membership</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<td class="old_line diff-line-num old" data-linenumber="1302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1302
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<pre style="margin: 0;">-<span id="LC1302" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1110
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<pre style="margin: 0;">+<span id="LC1110" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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1303
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<td class="new_line diff-line-num" data-linenumber="1111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1111
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<pre style="margin: 0;"> <span id="LC1111" class="line" lang="cpp"> <span class="p">{</span></span>
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1304
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<pre style="margin: 0;">-<span id="LC1304" class="line" lang="cpp"> <span class="n" style="color: #333;">PyObject</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">py_item</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyList_GetItem</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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1305
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<pre style="margin: 0;">-<span id="LC1305" class="line" lang="cpp"></span>
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1306
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<pre style="margin: 0;">-<span id="LC1306" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PyNumber_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">PyIndex_Check</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">))</span></span>
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1307
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1307" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="old_line diff-line-num old" data-linenumber="1308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1308
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1308" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsSize_t</span><span class="p">(</span><span class="n" style="color: #333;">py_item</span><span class="p">);</span></span>
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<td class="old_line diff-line-num old" data-linenumber="1309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1309
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1309" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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1310
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1310" class="line" lang="cpp"> <span class="p">{</span></span>
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1311
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1311" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Membership cannot exceed number of nodes."</span><span class="p">);</span></span>
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1312
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1312" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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1313
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1313" class="line" lang="cpp"> <span class="p">}</span></span>
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1314
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<pre style="margin: 0;">-<span id="LC1314" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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1315
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1315" class="line" lang="cpp"> <span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">v</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>
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1316
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1316" class="line" lang="cpp"> <span class="p">}</span></span>
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1317
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1317" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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1318
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1318" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="old_line diff-line-num old" data-linenumber="1319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1319
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1319" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_TypeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Expected integer value for membership vector."</span><span class="p">);</span></span>
</pre>
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1320
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1320" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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1321
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<td class="new_line diff-line-num old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1321" class="line" lang="cpp"> <span class="p">}</span></span>
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1112
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<pre style="margin: 0;">+<span id="LC1112" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">set_membership</span><span class="p">(</span><span class="n" style="color: #333;">create_size_t_vector</span><span class="p">(</span><span class="n" style="color: #333;">py_membership</span><span class="p">));</span></span>
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<td class="new_line diff-line-num new" data-linenumber="1113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1113
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<pre style="margin: 0;">+<span id="LC1113" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="new_line diff-line-num new" data-linenumber="1114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1114
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<pre style="margin: 0;">+<span id="LC1114" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span> <span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">e</span> <span class="p">)</span></span>
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1115
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<pre style="margin: 0;">+<span id="LC1115" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1116" class="line" lang="cpp"> <span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Could not set membership: "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">string</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">.</span><span class="n" style="color: #333;">what</span><span class="p">());</span></span>
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1117
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<pre style="margin: 0;">+<span id="LC1117" class="line" lang="cpp"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_BaseException</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC1118" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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1119
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<pre style="margin: 0;"> <span id="LC1119" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC1323" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1324" class="line" lang="cpp"> <span class="n" style="color: #333;">partition</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">set_membership</span><span class="p">(</span><span class="n" style="color: #333;">membership</span><span class="p">);</span></span>
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1120
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<pre style="margin: 0;"> <span id="LC1120" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1121" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG</span></span>
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1122
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<pre style="margin: 0;"> <span id="LC1122" class="line" lang="cpp"> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Exiting set_membership();"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<li id="411a97a2d1e80b496795370c037c3824250ed4bf">
<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#411a97a2d1e80b496795370c037c3824250ed4bf"><strong>tests/test_Optimiser.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,33 +2,29 @@ import unittest</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">igraph</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">ig</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">leidenalg</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">PY3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">></span> <span class="s" style="color: #d14;">'3'</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">PY3</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">functools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="nb" style="color: #0086b3;">reduce</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">functools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="nb" style="color: #0086b3;">reduce</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">OptimiserTest</span><span class="p">(</span><span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestCase</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">Optimiser</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">Optimiser</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_move_nodes</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">100</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after move nodes incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after move nodes incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_move_nodes_with_max_comm_size</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">max_comm_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">17</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">15</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after move nodes (max_comm_size=17) incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after move nodes (max_comm_size=17) incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_move_nodes_with_fixed</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># One edge plus singleton, but the two connected nodes are fixed</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,76 +32,76 @@ class OptimiserTest(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">is_membership_fixed</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.1</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">is_membership_fixed</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">is_membership_fixed</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">is_membership_fixed</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">is_membership_fixed</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.1) of one edge plus singleton after move nodes with fixed nodes is incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.1) of one edge plus singleton after move nodes with fixed nodes is incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_merge_nodes</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">100</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">total_weight_in_all_comms</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">(),</span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"total_weight_in_all_comms not equal to ecount of graph."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"total_weight_in_all_comms not equal to ecount of graph."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_merge_nodes_with_max_comm_size</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">max_comm_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">17</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">15</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes (max_comm_size=17) incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes (max_comm_size=17) incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_diff_move_node_optimality</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Erdos_Renyi</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">5.</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">100</span><span class="p">,</span> <span class="n" style="color: #333;">directed</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">loops</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.1</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Erdos_Renyi</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">5.</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">100</span><span class="p">,</span> <span class="n" style="color: #333;">directed</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">loops</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.1</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="k" style="font-weight: 600;">while</span> <span class="mi" style="color: #099;">0</span> <span class="o" style="font-weight: 600;"><</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">vs</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="python"> <span class="n" style="color: #333;">neigh_comms</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">u</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">v</span><span class="p">.</span><span class="n" style="color: #333;">neighbors</span><span class="p">())<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">neigh_comms</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">u</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">v</span><span class="p">.</span><span class="n" style="color: #333;">neighbors</span><span class="p">())</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">neigh_comms</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertLessEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">diff_move</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">c</span><span class="p">),</span> <span class="mf" style="color: #099;">1e-10</span><span class="p">,</span> <span class="c1" style="color: #998; font-style: italic;"># Allow for a small difference up to rounding error.</span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Was able to move a node to a better community, violating node optimality."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Was able to move a node to a better community, violating node optimality."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_optimiser</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">reduce</span><span class="p">(</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">disjoint_union</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Tree</span><span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">TREE_UNDIRECTED</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">)))<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">reduce</span><span class="p">(</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">disjoint_union</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Tree</span><span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">TREE_UNDIRECTED</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">)))</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">*</span><span class="p">[</span><span class="mi" style="color: #099;">10</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition failed to find different components with CPMVertexPartition(resolution_parameter=0)"</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition failed to find different components with CPMVertexPartition(resolution_parameter=0)"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_optimiser_with_max_comm_size</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">max_comm_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">10</span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">*</span><span class="p">[</span><span class="mi" style="color: #099;">10</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition (max_comm_size=10) failed to find different components with CPMVertexPartition(resolution_parameter=0)"</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition (max_comm_size=10) failed to find different components with CPMVertexPartition(resolution_parameter=0)"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_optimiser_split_with_max_comm_size</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.5</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">merge_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">,</span> <span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_NEIGH_COMMS</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">100</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes incorrect."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"CPMVertexPartition(resolution_parameter=0.5) of complete graph after merge nodes incorrect."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">max_comm_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">10</span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">*</span><span class="p">[</span><span class="mi" style="color: #099;">10</span><span class="p">],</span></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition (max_comm_size=10) failed to find different components with CPMVertexPartition(resolution_parameter=0.5)"</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition (max_comm_size=10) failed to find different components with CPMVertexPartition(resolution_parameter=0.5)"</span><span class="p">)</span></span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_optimiser_with_is_membership_fixed</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -148,28 +144,28 @@ class OptimiserTest(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_neg_weight_bipartite</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full_Bipartite</span><span class="p">(</span><span class="mi" style="color: #099;">50</span><span class="p">,</span> <span class="mi" style="color: #099;">50</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">[</span><span class="s" style="color: #d14;">'weight'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">0.1</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=-</span><span class="mf" style="color: #099;">0.1</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_COMMS</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Full_Bipartite</span><span class="p">(</span><span class="mi" style="color: #099;">50</span><span class="p">,</span> <span class="mi" style="color: #099;">50</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">[</span><span class="s" style="color: #d14;">'weight'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">0.1</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_parameter</span><span class="o" style="font-weight: 600;">=-</span><span class="mf" style="color: #099;">0.1</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">consider_comms</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ALL_COMMS</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="p">[</span><span class="mi" style="color: #099;">50</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition failed to find bipartite structure with CPMVertexPartition(resolution_parameter=-0.1)"</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"After optimising partition failed to find bipartite structure with CPMVertexPartition(resolution_parameter=-0.1)"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_resolution_profile</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Famous</span><span class="p">(</span><span class="s" style="color: #d14;">'Zachary'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="python"> <span class="n" style="color: #333;">profile</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">resolution_profile</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_range</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"> <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Famous</span><span class="p">(</span><span class="s" style="color: #d14;">'Zachary'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="python"> <span class="n" style="color: #333;">profile</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">resolution_profile</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p">,</span> <span class="n" style="color: #333;">resolution_range</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"> <span class="n" style="color: #333;">profile</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">vcount</span><span class="p">()],</span></span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Resolution profile incorrect: at resolution 0, not equal to a single community for CPM."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Resolution profile incorrect: at resolution 0, not equal to a single community for CPM."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertListEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="python"> <span class="n" style="color: #333;">profile</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">sizes</span><span class="p">(),</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">vcount</span><span class="p">(),</span></span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Resolution profile incorrect: at resolution 1, not equal to a singleton partition for CPM."</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Resolution profile incorrect: at resolution 1, not equal to a singleton partition for CPM."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#%%</span></span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'__main__'</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#%%</span></span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">main</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="python"> <span class="n" style="color: #333;">suite</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestLoader</span><span class="p">().</span><span class="n" style="color: #333;">discover</span><span class="p">(</span><span class="s" style="color: #d14;">'.'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TextTestRunner</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">).</span><span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">suite</span><span class="p">)<span class="idiff left right">;</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">main</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="python"> <span class="n" style="color: #333;">suite</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestLoader</span><span class="p">().</span><span class="n" style="color: #333;">discover</span><span class="p">(</span><span class="s" style="color: #d14;">'.'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TextTestRunner</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">).</span><span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">suite</span><span class="p">)</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-leidenalg/-/compare/d8851a3c61c3ab166e7137e7aa1bec8aba8bb2ac...6961a5fd4911492de35b798dfb9459cb870ce91d#7be53e12c88e3e38db485dc349cf906778c4d01b"><strong>tests/test_VertexPartition.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,13 +6,11 @@ from copy import deepcopy</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">ddt</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">ddt</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">unpack</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="n" style="color: #333;">PY3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">></span> <span class="s" style="color: #d14;">'3'</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#%%</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">name_object</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"> <span class="n" style="color: #333;">obj</span><span class="p">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">obj</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"> <span class="n" style="color: #333;">obj</span><span class="p">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">obj</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="n" style="color: #333;">graphs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">###########################################################################</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,7 +56,7 @@ graphs = [</td>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"> <span class="s" style="color: #d14;">'Lattice_undirected'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"> <span class="n" style="color: #333;">name_object</span><span class="p">(</span><span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Lattice</span><span class="p">([</span><span class="mi" style="color: #099;">100</span><span class="p">],</span> <span class="n" style="color: #333;">nei</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">directed</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">mutual</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">circular</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="s" style="color: #d14;">'Lattice_directed'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="python"> <span class="p">]<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"> <span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"><span class="n" style="color: #333;">bipartite_graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name_object</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">ig</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">.</span><span class="n" style="color: #333;">Bipartite</span><span class="p">([</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -75,91 +73,88 @@ bipartite_graph = name_object(</td>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"> <span class="s" style="color: #d14;">'bipartite_example'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">make_weighted</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">PY3</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">[</span><span class="s" style="color: #d14;">'weight'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">random</span><span class="p">.</span><span class="n" style="color: #333;">random</span><span class="p">()</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">())];</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">[</span><span class="s" style="color: #d14;">'weight'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">random</span><span class="p">.</span><span class="n" style="color: #333;">random</span><span class="p">()</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">xrange</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">())];</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">'_weighted'</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">[</span><span class="s" style="color: #d14;">'weight'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">random</span><span class="p">.</span><span class="n" style="color: #333;">random</span><span class="p">()</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">ecount</span><span class="p">())]</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">'_weighted'</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python"><span class="n" style="color: #333;">graphs</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">[</span><span class="n" style="color: #333;">make_weighted</span><span class="p">(</span><span class="n" style="color: #333;">H</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">H</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graphs</span><span class="p">]<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"><span class="n" style="color: #333;">graphs</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">[</span><span class="n" style="color: #333;">make_weighted</span><span class="p">(</span><span class="n" style="color: #333;">H</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">H</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graphs</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">BaseTest</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">ddt</span></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="python"> <span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">MutableVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestCase</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">Optimiser</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">Optimiser</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">data</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">graphs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_move_nodes</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">graph</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'weight'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">.</span><span class="n" style="color: #333;">attributes</span><span class="p">()</span> <span class="ow" style="font-weight: 600;">and</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">SkipTest</span><span class="p">(</span><span class="s" style="color: #d14;">'Significance doesn</span><span class="se" style="color: #d14;">\'</span><span class="s" style="color: #d14;">t handle weighted graphs'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">SkipTest</span><span class="p">(</span><span class="s" style="color: #d14;">'Significance doesn</span><span class="se" style="color: #d14;">\'</span><span class="s" style="color: #d14;">t handle weighted graphs'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'weight'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">.</span><span class="n" style="color: #333;">attributes</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">vcount</span><span class="p">()):</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">degree</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">u</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">neighbors</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">diff_move</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">q1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">move_node</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">q2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">u</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">neighbors</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">diff_move</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">q1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">move_node</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">membership</span><span class="p">[</span><span class="n" style="color: #333;">u</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">q2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertAlmostEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">q2</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">diff</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">places</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">5</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Difference in quality ({0}) not equal to calculated difference ({1})"</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">q2</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q1</span><span class="p">,</span> <span class="n" style="color: #333;">diff</span><span class="p">))<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">q2</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q1</span><span class="p">,</span> <span class="n" style="color: #333;">diff</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">data</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">graphs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_aggregate_partition</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">graph</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'weight'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">.</span><span class="n" style="color: #333;">attributes</span><span class="p">()</span> <span class="ow" style="font-weight: 600;">and</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="python"> <span class="n" style="color: #333;">aggregate_partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">aggregate_partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertAlmostEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">aggregate_partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">places</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">5</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Quality not equal for aggregate partition.'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">from_coarse_partition</span><span class="p">(</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Quality not equal for aggregate partition.'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">move_nodes</span><span class="p">(</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">from_coarse_partition</span><span class="p">(</span><span class="n" style="color: #333;">aggregate_partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertAlmostEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="python"> <span class="n" style="color: #333;">aggregate_partition</span><span class="p">.</span><span class="n" style="color: #333;">quality</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="python"> <span class="n" style="color: #333;">places</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">5</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Quality not equal from coarser partition.'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Quality not equal from coarser partition.'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">data</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">graphs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_total_weight_in_all_comms</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">graph</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'weight'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">.</span><span class="n" style="color: #333;">attributes</span><span class="p">()</span> <span class="ow" style="font-weight: 600;">and</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">sum</span><span class="p">([</span><span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">total_weight_in_comm</span><span class="p">(</span><span class="n" style="color: #333;">c</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span><span class="p">,</span><span class="n" style="color: #333;">_</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)])<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">sum</span><span class="p">([</span><span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">total_weight_in_comm</span><span class="p">(</span><span class="n" style="color: #333;">c</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span><span class="p">,</span><span class="n" style="color: #333;">_</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)])</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">assertAlmostEqual</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"> <span class="n" style="color: #333;">s</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">total_weight_in_all_comms</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"> <span class="n" style="color: #333;">places</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">5</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Total weight in all communities ({0}) not equal to the sum of the weight in all communities ({1}).'</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="n" style="color: #333;">partition</span><span class="p">.</span><span class="n" style="color: #333;">total_weight_in_all_comms</span><span class="p">())</span></span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="python"> <span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">data</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">graphs</span><span class="p">)</span></span>
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156
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_copy</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">graph</span><span class="p">):</span></span>
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157
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'weight'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">graph</span><span class="p">.</span><span class="n" style="color: #333;">es</span><span class="p">.</span><span class="n" style="color: #333;">attributes</span><span class="p">()</span> <span class="ow" style="font-weight: 600;">and</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">weights</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'weight'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"> <span class="n" style="color: #333;">partition</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span><span class="p">(</span><span class="n" style="color: #333;">graph</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">optimiser</span><span class="p">.</span><span class="n" style="color: #333;">optimise_partition</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="python"> <span class="n" style="color: #333;">partition2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">deepcopy</span><span class="p">(</span><span class="n" style="color: #333;">partition</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -186,23 +181,23 @@ class BaseTest:</td>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">ModularityVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">ModularityVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ModularityVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">ModularityVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">ModularityVertexPartition</span></span>
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191
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="python"></span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">RBERVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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193
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">RBERVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">RBERVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">RBERVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">RBERVertexPartition</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">RBConfigurationVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">RBConfigurationVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">RBConfigurationVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">RBConfigurationVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">RBConfigurationVertexPartition</span></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">CPMVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">CPMVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">CPMVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">CPMVertexPartition</span></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_Bipartite</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="python"> <span class="n" style="color: #333;">graph</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bipartite_graph</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -215,17 +210,17 @@ class CPMVertexPartitionTest(BaseTest.MutableVertexPartitionTest):</td>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">SurpriseVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">SurpriseVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SurpriseVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">SurpriseVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SurpriseVertexPartition</span></span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">SignificanceVertexPartitionTest</span><span class="p">(</span><span class="n" style="color: #333;">BaseTest</span><span class="p">.</span><span class="n" style="color: #333;">MutableVertexPartitionTest</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">SignificanceVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span><span class="p"><span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">SignificanceVertexPartitionTest</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">setUp</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">partition_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">leidenalg</span><span class="p">.</span><span class="n" style="color: #333;">SignificanceVertexPartition</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#%%</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'__main__'</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#%%</span></span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">main</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="python"> <span class="n" style="color: #333;">suite</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestLoader</span><span class="p">().</span><span class="n" style="color: #333;">discover</span><span class="p">(</span><span class="s" style="color: #d14;">'.'</span><span class="p">)<span class="idiff left right">;</span></span></span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TextTestRunner</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">).</span><span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">suite</span><span class="p">)<span class="idiff left right">;</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">main</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"> <span class="n" style="color: #333;">suite</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestLoader</span><span class="p">().</span><span class="n" style="color: #333;">discover</span><span class="p">(</span><span class="s" style="color: #d14;">'.'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python"> <span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TextTestRunner</span><span class="p">(</span><span class="n" style="color: #333;">verbosity</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">).</span><span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">suite</span><span class="p">)</span></span></pre>
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