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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d0f3669d0cd63b22978a2acf19fe4ec23e13547d">d0f3669d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-10T13:42:24+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d0f3669d0cd63b22978a2acf19fe4ec23e13547d#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 10 Jul 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 10 Jul 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">69</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">70</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 89 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">7</span> | {oncology,laboratory,imaging,covid-19,his,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">8</span> | {oncology,laboratory,imaging,covid-19,his,practice} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> gdcm | 34 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 27 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 19 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 18 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> odin | 18 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,8 +23,8 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> nifticlib | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> mia | 7 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,15 +37,16 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> sight | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> busco | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> king | 5 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> <span class="idiff left">jebl2 </span> | <span class="idiff">4</span> | {bio<span class="idiff right">-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> <span class="idiff left">treeview</span> | <span class="idiff">5</span> | {bio<span class="idiff right">,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> oscar | 4 | {tools,data,practice} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> salmid | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> <span class="idiff left">treeview</span> | 4 | {bio<span class="idiff right">,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> <span class="idiff left">stacks </span> | 4 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> biojava-live | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,8 +61,7 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> salmon | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> staden | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -85,10 +85,10 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> pymia | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> saint | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> salmon | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> samblaster | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> sibsim4 | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> spread-phy | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> staden | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> anfo | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> arden | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> assemblytics | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,7 +134,6 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> segemehl | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> sga | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> soapaligner | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> soapsnp | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> spaced | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,5 +236,5 @@ Last-Update: Sat, 10 Jul 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> python-seqcluster | -1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext">(26<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">(26<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"></span></pre>
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