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GitLab
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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/e06a933efc0bf1f1470f00ac79bcb9bdb474ae48">e06a933e</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T19:26:26+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/47e5fc095a4314a2e737840ad50c7cfa7f95c3c8">47e5fc09</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T19:26:33+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.3+ds'
Update to upstream version '1.3+ds'
with Debian dir bd4bf5d83cc0cc3f926b526e3c9293d1877ca025</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/9811b57d309cff7003c6b743ed036dbbe9a4ee28">9811b57d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T20:01:17+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p: Refresh and adapt patches to new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/a1e28805efb0492da29541358fcacf5b5832dc1e">a1e28805</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T20:23:29+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/hardening.patch: Inject CPPFLAGS and LDFLAGS at needed places
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/91a33a3ff609487fac3e278c0764193a93aa81ab">91a33a3f</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T20:41:24+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/build-more-programs.patch: Also build and vendor pxupgma pxnj
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/72f7bef7750abdcab6ed1a354bd674dc67ec172d">72f7bef7</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T20:41:24+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/tests/run-unit-test: Fix autopkgtests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/-/commit/2720247011c68d205fbc7f52b6700c963d450584">27202470</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-10T20:41:35+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/ch: Update TODO
</pre>
</li>
</ul>
<h4>13 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#962a68bba6527e758faa32a76c8331900a9078b0">
<span class="new-file">
+
.github/workflows/build-test.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#5ab16530a004084ca4c91038966b19a7984db7f3">
<span class="new-file">
+
debian/patches/build-more-programs.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#0e851bd9762dc8b6b479bde9cdff0e089eb7d986">
debian/patches/link_lnlopt.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#cf79ddb61167f921785e89a4cd5875dbea3808b3">
<span class="deleted-file">
−
example_files/pxaa2cdn_example/AA_Alignment.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f6140aa40dd365d4737eeb8b5a80a30905412ad">
<span class="new-file">
+
example_files/pxaa2cdn_example/ND6_aa.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#015273a50da04205157e7235d9f481d268a484ac">
<span class="new-file">
+
example_files/pxaa2cdn_example/ND6_nuc.fa
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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