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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/998864eb60584c00b5d3eee0a020c733676fbce0">998864eb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-11T13:42:21+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/998864eb60584c00b5d3eee0a020c733676fbce0#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 11 Jul 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 11 Jul 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 170 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 89 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 48 | {oncology,laboratory,imaging,covid-19,his,practice} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 34 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 35 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> amide | 29 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 27 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 20 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 18 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> odin | 18 | {imaging,imaging<span class="idiff left right">-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> odin | 18 | {imaging<span class="idiff left right">-dev</span>,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> gnumed-server | 12 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> orthanc-webviewer | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> gnumed-server | 11 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> openslide | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> n<span class="idiff left">ifticlib</span> | 8 | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> n<span class="idiff left">gs-sdk </span> | 8 | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> mia | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> libdivsufsort | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> nifti2dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> nifticlib | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> sight | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> busco | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> king | 5 | {typesett<span class="idiff left right">ing,imag</span>ing} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> king | 5 | {<span class="idiff left right">imaging,</span>typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> salmid | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> treeview | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> oscar | 4 | {tools,data,practice} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> salmid | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> biojava-live | 3 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,20 +58,19 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> lagan | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> melting | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> ngs-sdk | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> nipype | 3 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> o<span class="idiff left">rthanc-postgresql</span> | 3 | {<span class="idiff right">imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> o<span class="idiff left">bitools </span> <span class="idiff"> </span>| 3 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> staden | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> biomaj3-cli | 2 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> brig | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> canu | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> embassy-domainatrix | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> embassy-domalign | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> embassy-domsearch | 2 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> embassy-domsearch | 2 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> ghmm | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,28 +78,27 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> mhap | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> obitools | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> phyutility | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> phast | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> phyutility | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> piler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> pymia | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> saint | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> salmon | 2 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> samblaster | 2 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> sibsim4 | 2 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> salmon | 2 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> samblaster | 2 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> sibsim4 | 2 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> spread-phy | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> anfo | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> arden | 1 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> arden | 1 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> assemblytics | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> biomaj3-cli | 1 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> bio-tradis | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> bio-tradis | 1 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> cat-bat | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> clonalframeml | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> clonalorigin | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> cufflinks | 1 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> cufflinks | 1 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> delly | 1 | {bio,covid-19} | </span>
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> ecopcr | 1 | {bio} | </span>
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> estscan | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -107,7 +107,6 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> hinge | 1 | {bio} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> ipig | 1 | {bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> jmodeltest | 1 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> libncl | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> libpal-java | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -117,8 +116,8 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> microbegps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> orthanc-python | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> paraclu | 1 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> perm | 1 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> paraclu | 1 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> perm | 1 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> placnet | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> prime-phylo | 1 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -128,7 +127,7 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> quorum | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> rambo-k | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> rdp-alignment | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> rtax | 1 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> rtax | 1 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> segemehl | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -143,24 +142,24 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> tvc | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> yaha | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> zalign | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> acedb | 0 | {cloud<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> acedb | 0 | {<span class="idiff left right">bio,</span>cloud} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> atropos | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> bamkit | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> bbmap | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> bamkit | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> bbmap | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> bmtk | 0 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> bustools | 0 | {bio,covid-19} | </span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> ctn | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> dextractor | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> dextractor | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> eegdev | 0 | {imaging-dev} | </span>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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161
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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162
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> htscodecs | 0 | {covid-19,bio-dev} | </span>
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163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> intake | 0 | {bio<span class="idiff left right">,bio</span>-dev} | </span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> intake | 0 | {bio-dev<span class="idiff left right">,bio</span>} | </span>
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164
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> kmerresistance | 0 | {bio} | </span>
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165
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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166
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,13 +173,14 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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174
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> libbpp-seq | 0 | {bio-dev} | </span>
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175
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> libbpp-seq-omics | 0 | {bio-dev} | </span>
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> libchado-perl | 0 | {bio-dev} | </span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> libctapimkt | 0 | {practice} | </span>
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> libdisorder | 0 | {bio-dev} | </span>
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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179
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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180
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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<td class="old_line diff-line-num" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">bio-dev,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> libmaus2 | 0 | {covid-19<span class="idiff left right">,bio-dev</span>} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -207,8 +207,8 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> pigx-rnaseq | 0 | {covid-19,bio} | </span>
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> plasmidid | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> pplacer | 0 | {<span class="idiff left right">covid-19,bio,</span>bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> plasmidid | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> pplacer | 0 | {bio-phylogeny<span class="idiff left right">,covid-19,bio</span>} | </span>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> python-seqcluster | 0 | {bio-dev,covid-19} | </span>
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> python-wdlparse | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,21 +216,21 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000</td>
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> shovill | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> shovill | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> simrisc | 0 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> skesa | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> spaln | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> smrtanalysis | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> spaln | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> srf | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> svim | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> thesias | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> tophat-recondition | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> tophat-recondition | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> trace2dbest | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> varscan | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> vienna-rna | 0 | {<span class="idiff left right">bio,</span>covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> varscan | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> vienna-rna | 0 | {covid-19<span class="idiff left right">,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> yanagiba | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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