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<h3>
Nilesh Patra pushed to branch repro
at <a href="https://salsa.debian.org/med-team/hhsuite">Debian Med / hhsuite</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8">4d87b6ae</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-17T21:33:10+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Attempt reproducible build
</pre>
</li>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#166d2f76ceaf157f84df3f2dd38571abad1d587a">
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+
debian/patches/fix
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
debian/salsa-ci.yml
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<h4>Changes:</h4>
<li id="166d2f76ceaf157f84df3f2dd38571abad1d587a">
<a href="https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8#166d2f76ceaf157f84df3f2dd38571abad1d587a"><strong>debian/patches/fix</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/hhhitlist.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/hhhitlist.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -26,8 +26,17 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> // Print date stamp</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> time_t* tp = new time_t;</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *tp = time(NULL);</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char *source_date_epoch = std::getenv("SOURCE_DATE_EPOCH");</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (source_date_epoch) {</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ std::istringstream iss(source_date_epoch);</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ iss >> *tp;</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (iss.fail() || !iss.eof()) {</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ std::cerr << "Error: Cannot parse SOURCE_DATE_EPOCH as integer\n";</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ exit(27);</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ } else {</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *tp = std::time(NULL);</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> out << "Date " << ctime(tp);</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> delete (tp);</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/data/query.hhr</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/data/query.hhr</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="p">@@ -3,7 +3,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> No_of_seqs 1 out of 1</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> Neff 1.0 </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> Searched_HMMs 1000</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-Date Fri Jul 26 12:18:42 2013</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> Command ./hhblits -i ../data/query.seq -d /home/meiermark/databases/uniprot20_2013_03/uniprot20_2013_03 -cpu 4 -n 1 -usecs -scores ./test.scores </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ drop-fmemopen.h.patch</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">python3</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">ppc64el.patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">exe_suffix</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">fix</span></pre>
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<a href="https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="yaml"></span></pre>
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