<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/cct">Debian Med / cct</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/e2885fc710b442a33ba08d8a5a3efc60fa26958f">e2885fc7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:52:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/5d7682a8264c4a58bfca231b17e345582883fcae">5d7682a8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:56:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/8c996c301859f25f037fd3ccbe1870a29cdaaf74">8c996c30</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:56:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/b99a55b9d6f291dd7968dd019d5a6dd73ce5ba19">b99a55b9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:58:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.2'
Update to upstream version '1.0.2'
with Debian dir 66d6a784f72e12e5c91e1031004e56ab80ee930b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/f25d6e496c4553eda420d5db6a07ee5691d7ebb0">f25d6e49</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:58:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/eb9cd4a6ad20aac999cc1b1130a492f7f7bbd957">eb9cd4a6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T07:58:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/55e24027b3c439125f81c7b3ef919b332b6991ae">55e24027</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-07-20T10:00:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#7d238d866edf248d7c1fc27f5c1781b6b7d3aad9">
debian/patches/cgview_path.patch
</a>
</li>
<li class="file-stats">
<a href="#db92f62a0924537d681cc0ace09f8f30bdcb5870">
debian/patches/conditionalize_blast_-Q_-D.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#fe13754ee447af181da1af2d7993cede5c63ff53">
debian/patches/testscripts.patch
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#b7595d3c080b8ce4e781beed3039039a9f6d424a">
lib/scripts/assign_cogs/test.sh
</a>
</li>
<li class="file-stats">
<a href="#5154841788b7a213298c8de7675418b6a81c646b">
lib/scripts/cgview_xml_builder/test_input/R_denitrificans.cogs
</a>
</li>
<li class="file-stats">
<a href="#02f017f890838f7f7e624ae465cf173ba7339177">
lib/scripts/convert_vcf_to_features/test.sh
</a>
</li>
<li class="file-stats">
<a href="#8f6d480e2f0233e20cd50821e5d8905d3056ae1c">
lib/scripts/get_cds/test.sh
</a>
</li>
<li class="file-stats">
<a href="#89440b309b758d7b8fe5ecd294fec8e791b9f5d2">
lib/scripts/get_orfs/test.sh
</a>
</li>
<li class="file-stats">
<a href="#7afde62a7e38b40abda1ff0a08dd81bf8d1c64cc">
lib/scripts/local_blast_client/local_blast_client.pl
</a>
</li>
<li class="file-stats">
<a href="#f36c2e36cff4b3025fde86c438c3f86257aacb2c">
lib/scripts/local_blast_client/test.sh
</a>
</li>
<li class="file-stats">
<a href="#6bd5d8dbf683a3acd9e36f4d76f729c01e73d5be">
lib/scripts/ncbi_search/README.md
</a>
</li>
<li class="file-stats">
<a href="#a49286c7e035efc3db26bcffa109062bed45fc5c">
lib/scripts/ncbi_search/ncbi_search.pl
</a>
</li>
<li class="file-stats">
<a href="#88aa0d5ecc27680f6005434b5a08680fe014d85a">
lib/scripts/ncbi_search/test.sh
</a>
</li>
<li class="file-stats">
<a href="#68077feed95de368ae4231d4bd18f87a97ad1dc7">
lib/scripts/sequence_to_multi_fasta/test.sh
</a>
</li>
<li class="file-stats">
<a href="#940f8dd45ecfa1b90bd15c6a8e172d65db20be93">
scripts/build_blast_atlas.sh
</a>
</li>
<li class="file-stats">
<a href="#510a672dfe2348f49b57cd06fa486f9c1cda6509">
scripts/build_blast_atlas_all_vs_all.sh
</a>
</li>
<li class="file-stats">
<a href="#92b2f4e0d86182d43d04b24efd7028607bddfa3f">
scripts/build_cog_db.sh
</a>
</li>
<li class="file-stats">
<a href="#7ff4eb941eb6365d5a767be817adbe1bd8e7aed4">
scripts/check_env.sh
</a>
</li>
<li class="file-stats">
<a href="#bc18b48cfa51ed281404c4b750b92b64f29f535a">
scripts/create_zoomed_maps.sh
</a>
</li>
<li class="file-stats">
<a href="#dfcbdbfe68f5bd846eaaae9a4c7e3a19ca7c299c">
scripts/fetch_all_refseq_bacterial_genomes.sh
</a>
</li>
<li class="file-stats">
<a href="#2d31c3f092433c61481e5c2e79097cd23b2139a0">
scripts/fetch_all_refseq_chloroplast_genomes.sh
</a>
</li>
<li class="file-stats">
<a href="#08bbb264a5bc8240576f82cf2a891aeb48a2060c">
scripts/fetch_all_refseq_mitochondrial_genomes.sh
</a>
</li>
<li class="file-stats">
<a href="#082759aebaa285a43ad2d7fe1b46979cff5a29d1">
scripts/fetch_genome_by_accession.sh
</a>
</li>
<li class="file-stats">
<a href="#61ee5b50fbfdca800380a0b4d051fc9e8fed277d">
scripts/fetch_refseq_bacterial_genomes_by_name.sh
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/cct/-/compare/3b43719bc1087426148aaa83b6918b7ed0eaa962...55e24027b3c439125f81c7b3ef919b332b6991ae">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>