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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/beagle">Debian Med / beagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/-/commit/57d484025233f5ce7c19fd1f8401f60951b3a89e">57d48402</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2021-07-23T18:14:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.2-210628</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#e1278bf77479ff52b202fca77ce03daef681ef95">
beagleutil/ChromIds.java
</a>
</li>
<li class="file-stats">
<a href="#5deb5056c0326ef2fa7706bf604aee0190919ece">
beagleutil/ChromInterval.java
</a>
</li>
<li class="file-stats">
<a href="#b35797e1b11f8d20e90b3d56030212885a937712">
beagleutil/IntInterval.java
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</li>
<li class="file-stats">
<a href="#85534c07448fab5d8653b5c56269bf9fe1c7283e">
<span class="new-file">
+
beagleutil/PbwtDivUpdater.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f3681b06dae45d0dfe680fe6a7cd8ca5cd04094b">
beagleutil/PbwtUpdater.java
</a>
</li>
<li class="file-stats">
<a href="#f8b6f8d8c7916002820fce4b962b3d4b2e5bf355">
beagleutil/SampleIds.java
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</li>
<li class="file-stats">
<a href="#98dec0ab46b960766ad98f9adeafe96136c0a429">
beagleutil/ThreadSafeIndexer.java
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</li>
<li class="file-stats">
<a href="#1884097eee2277cb5658cd255298b582766b2f14">
blbutil/BGZIPOutputStream.java
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<li class="file-stats">
<a href="#788f897abf28309b87de9729f0dc026f594211fa">
<span class="new-file">
+
blbutil/BitList.java
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<li class="file-stats">
<a href="#0cf2c85c588a2fb59c97c97c485cc8a66f5a0f53">
<span class="new-file">
+
blbutil/BlockLineReader.java
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<li class="file-stats">
<a href="#e37ab5cf3b497ceb310d0d9ee8bd18e609f4c00d">
blbutil/Const.java
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<li class="file-stats">
<a href="#16719bc23bce502b2ebc67f8f38b13b159126355">
blbutil/DoubleArray.java
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<li class="file-stats">
<a href="#cde7bd63ffdb333806d832fd9b3c91737660465d">
blbutil/FileIt.java
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<li class="file-stats">
<a href="#6079b16bd032367aafb4fb3b5a7ec3cc428ebc03">
blbutil/FileUtil.java
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<li class="file-stats">
<a href="#4e6ab3267343934e3de38299e6fdc4e3f2a300d2">
blbutil/Filter.java
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<li class="file-stats">
<a href="#08657c75a9a9746475e49445932865fc0544632d">
blbutil/FloatArray.java
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<li class="file-stats">
<a href="#1b00c0f3cd07a4d710dc1b87516e67596006635f">
blbutil/FloatList.java
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<li class="file-stats">
<a href="#1928aebe75a42243fe3f56cf57a32c12bb414d3e">
blbutil/InputIt.java
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<li class="file-stats">
<a href="#21e2e24eb0204d47dfc1265291352d4231fa819e">
blbutil/MultiThreadUtils.java
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<li class="file-stats">
<a href="#3e5b49c9c700b85f5ed3318cbab573548eb58f0a">
blbutil/Pair.java
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<li class="file-stats">
<a href="#e0b91020f8e992ebb7ede4ba8cb317163a5340b7">
blbutil/SampleFileIt.java
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<li class="file-stats">
<a href="#557017c328fd588b15d0e5bc8578a73bae53585d">
blbutil/StringUtil.java
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</li>
<li class="file-stats">
<a href="#569d1e1ae30f252e98526e6aa870ed406131b290">
blbutil/Utilities.java
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<li class="file-stats">
<a href="#660fa08874a280c3a191249af38136139fa806d3">
blbutil/Validate.java
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</li>
<li class="file-stats">
<a href="#b2ba9080612250531e5601745e2e52ed48f1770e">
bref/AsIsBref3Writer.java
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<li class="file-stats">
<a href="#88c53e80182ef20a8cdfed427d5e651d37907e75">
bref/Bref3.java
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<li class="file-stats">
<a href="#75b4875e136736cf8fa3756993e43d51ba5a980f">
bref/Bref3It.java
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<li class="file-stats">
<a href="#923ab2081306a60ce903c2304d7d5d6f3224175c">
bref/Bref3Reader.java
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</li>
<li class="file-stats">
<a href="#777fdd0f91d44e45761a7babec350d56c57ce62e">
bref/BrefBlock.java
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</li>
<li class="file-stats">
<a href="#c25c6925c8263a9d278591050c88c7543eca43ee">
bref/BrefWriter.java
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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