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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/samtools-legacy">Debian Med / samtools-legacy</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/samtools-legacy/-/commit/030030c76b4ca1b2740be65a8daafb088858e38a">030030c7</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-24T23:08:01+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch to add in hardening options
</pre>
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<strong><a href="https://salsa.debian.org/med-team/samtools-legacy/-/commit/6b1074f0d557417c9a4935c0995fd32ba3ea4d31">6b1074f0</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-07-24T23:08:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Interim changelog entry
</pre>
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<h4>3 changed files:</h4>
<ul>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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+
debian/patches/hardening.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/samtools-legacy/-/compare/baa30d41a44112f8d171783aca34c5f5cdfdb687...6b1074f0d557417c9a4935c0995fd32ba3ea4d31#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,8 +4,9 @@ samtools-legacy (0.1.19+dfsg-2) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add Depends on zlib1g-dev</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Add autopkgtests</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Declare compliance with policy 4.5.1</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add patch to add in hardening options</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sat, 24 Jul 2021 2<span class="idiff left">2:47</span>:0<span class="idiff right">9</span> +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sat, 24 Jul 2021 2<span class="idiff left">3:06</span>:0<span class="idiff right">5</span> +0530</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">samtools-legacy (0.1.19+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<li id="4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<a href="https://salsa.debian.org/med-team/samtools-legacy/-/compare/baa30d41a44112f8d171783aca34c5f5cdfdb687...6b1074f0d557417c9a4935c0995fd32ba3ea4d31#4d4a394ff4174f20019a8af4d8b6185efe92c21f"><strong>debian/patches/hardening.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: <short description, required></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> <long description that can span multiple lines, optional></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: <name and email of author, optional></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Origin: <upstream|backport|vendor|other>, <URL, required except if Author is present></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Bug: <URL to the upstream bug report if any, implies patch has been forwarded, optional></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Bug-<Vendor>: <URL to the vendor bug report if any, optional></span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">Forwarded: <URL|no|not-needed, useless if you have a Bug field, optional></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">Applied-Upstream: <version|URL|commit, identifies patches merged upstream, optional></span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">Reviewed-by: <name and email of a reviewer, optional></span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">Last-Update: 2021-07-24 <YYYY-MM-DD, last update of the meta-information, optional></span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/examples/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/examples/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -34,7 +34,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> (cd ..; make libbam.a)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> calDepth:../libbam.a calDepth.c</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gcc -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CFLAGS) $(CPPFLAGS) -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> clean:</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf</span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fix_example_makefile.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix_segfault_with_small_ref.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix_coverage_cap.patch</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">hardening.patch</span></pre>
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