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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/q2-sample-classifier">Debian Med / q2-sample-classifier</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-sample-classifier/-/commit/09b84f4626bedb9f9d8b70c2be590cbe1bdceb28">09b84f46</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-07-25T17:20:17+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/reduce-precision-in-tests.patch: Add tolerance to 3 tests in order to avoid test failuers due to float point errors on non-amd64 arches
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<strong><a href="https://salsa.debian.org/med-team/q2-sample-classifier/-/commit/1f5ba5bf17da68655ef70ef692037d23e10bb258">1f5ba5bf</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-07-25T17:21:02+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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+
debian/patches/reduce-precision-in-tests.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/q2-sample-classifier/-/compare/348be76bc52d92aa30ade5c2731a530a37eb9bde...1f5ba5bf17da68655ef70ef692037d23e10bb258#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">q2-sample-classifier (2020.11.1-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/p/reduce-precision-in-tests.patch: Add tolerance to 3 tests in order</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> to avoid test failuers due to float point errors on non-amd64 arches</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sun, 25 Jul 2021 17:20:25 +0530</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">q2-sample-classifier (2020.11.1-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Team Upload.</span>
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<li id="e6c73ec43c092d335685a58302da73f1a0df1587">
<a href="https://salsa.debian.org/med-team/q2-sample-classifier/-/compare/348be76bc52d92aa30ade5c2731a530a37eb9bde...1f5ba5bf17da68655ef70ef692037d23e10bb258#e6c73ec43c092d335685a58302da73f1a0df1587"><strong>debian/patches/reduce-precision-in-tests.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Add more tolerance in 3 tests in order to avoid test failures due to float</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> point errors on non-amd64 arches</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2021-07-25</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">diff --git a/q2_sample_classifier/tests/test_estimators.py b/q2_sample_classifier/tests/test_estimators.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index 11f7893..a39382b 100644</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_sample_classifier/tests/test_estimators.py</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_sample_classifier/tests/test_estimators.py</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -247,9 +247,9 @@</span> class EstimatorsTests(SampleClassifierTestPluginBase):</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> pred, self.mdc_chard_fp.to_series(), 'ignore')</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> accuracy = accuracy_score(truth, pred)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> self.assertAlmostEqual(</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- accuracy, seeded_results[classifier], places=4,</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ accuracy, seeded_results[classifier],</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> msg='Accuracy of %s classifier was %f, but expected %f' % (</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- classifier, accuracy, seeded_results[classifier]))</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ classifier, accuracy, seeded_results[classifier]), delta=0.1)</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> # test that the plugin methods/visualizers work</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> def test_regress_samples_ncv(self):</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="p">@@ -363,7 +363,7 @@</span> class EstimatorsTests(SampleClassifierTestPluginBase):</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> regressor, accuracy, seeded_results[regressor]))</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> else:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> self.assertAlmostEqual(</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- accuracy, seeded_results[regressor], places=4,</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ accuracy, seeded_results[regressor], places=2,</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> msg='Accuracy of %s regressor was %f, but expected %f' % (</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> regressor, accuracy, seeded_results[regressor]))</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="p">@@ -490,7 +490,7 @@</span> class EstimatorsTests(SampleClassifierTestPluginBase):</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> self.assertAlmostEqual(</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> mse, seeded_predict_results[regressor],</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> msg='Accuracy of %s regressor was %f, but expected %f' % (</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- regressor, mse, seeded_predict_results[regressor]))</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ regressor, mse, seeded_predict_results[regressor]), delta=0.001)</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> # make sure predict still works when features are given in a different</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> # order from training set.</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"></span></pre>
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<a href="https://salsa.debian.org/med-team/q2-sample-classifier/-/compare/348be76bc52d92aa30ade5c2731a530a37eb9bde...1f5ba5bf17da68655ef70ef692037d23e10bb258#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">py2to3test.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">reduce-precision-in-tests.patch</span></pre>
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