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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/samtools-legacy">Debian Med / samtools-legacy</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/samtools-legacy/-/commit/3518e10c1642a371ce2afebc7aa847a7ed146b72">3518e10c</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-07-25T15:10:34+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert non-essential changes
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<strong><a href="https://salsa.debian.org/med-team/samtools-legacy/-/commit/52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d">52f7c6aa</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-07-25T20:41:34+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<span class="deleted-file">
−
debian/patches/hardening.patch
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</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/samtools-legacy/-/compare/6b1074f0d557417c9a4935c0995fd32ba3ea4d31...52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">samtools-legacy (0.1.19+dfsg-2) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">samtools-legacy (0.1.19+dfsg-2) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add Depends on zlib1g-dev</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Add autopkgtests</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * Declare compliance with policy 4.5.1</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> * Add patch to add in hardening options</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> S<span class="idiff left">at</span>, 2<span class="idiff">4</span> Jul 2021 2<span class="idiff right">3:06:05</span> +0530</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> S<span class="idiff left">un</span>, 2<span class="idiff">5</span> Jul 2021 2<span class="idiff right">0:41:17</span> +0530</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">samtools-legacy (0.1.19+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/samtools-legacy/-/compare/6b1074f0d557417c9a4935c0995fd32ba3ea4d31...52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Priority: optional</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> libncurses5-dev,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/samtools-legacy</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/samtools-legacy.git</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Homepage: https://www.htslib.org/</span>
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<a href="https://salsa.debian.org/med-team/samtools-legacy/-/compare/6b1074f0d557417c9a4935c0995fd32ba3ea4d31...52f7c6aa0fbfe7dfbb973b80b3ff5ea242f2fb9d#4d4a394ff4174f20019a8af4d8b6185efe92c21f"><strong>debian/patches/hardening.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: <short description, required></span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> <long description that can span multiple lines, optional></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Author: <name and email of author, optional></span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="p">Origin: <upstream|backport|vendor|other>, <URL, required except if Author is present></span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">Bug: <URL to the upstream bug report if any, implies patch has been forwarded, optional></span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">Bug-<Vendor>: <URL to the vendor bug report if any, optional></span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="p">Forwarded: <URL|no|not-needed, useless if you have a Bug field, optional></span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">Applied-Upstream: <version|URL|commit, identifies patches merged upstream, optional></span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">Reviewed-by: <name and email of a reviewer, optional></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="p">Last-Update: 2021-07-24 <YYYY-MM-DD, last update of the meta-information, optional></span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/examples/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/examples/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -34,7 +34,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> (cd ..; make libbam.a)</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> calDepth:../libbam.a calDepth.c</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gcc -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CFLAGS) $(CPPFLAGS) -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread $(LDFLAGS)</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> clean:</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf</span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fix_example_makefile.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix_segfault_with_small_ref.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix_coverage_cap.patch</span></pre>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">hardening.patch</span></pre>
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