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<h3>
Shruti Sridhar pushed to branch master
at <a href="https://salsa.debian.org/med-team/segemehl">Debian Med / segemehl</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/fc89b603f8c327e0babf16ce407946c608a2050c">fc89b603</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-08-01T16:05:26+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add test data
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/28b8248ac18c9461a0c336f612ceea84c7c8ec07">28b8248a</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-08-01T16:05:49+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/758a61368edfeaaac8810825dd874bbabb90adb0">758a6136</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-08-01T16:06:18+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install docs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/6c607df4f452d425a634fae241f8a321c4f28a86">6c607df4</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-08-01T16:08:27+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
</ul>
<h4>10 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<span class="new-file">
+
debian/README.test
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
<span class="new-file">
+
debian/docs
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</li>
<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
<span class="new-file">
+
debian/examples
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</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
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<li class="file-stats">
<a href="#e2252398e1704cc2c1b4e3b253f203ab5cd8bcb7">
<span class="new-file">
+
debian/tests/data/myseq.fa
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<li class="file-stats">
<a href="#95df921653cde4307aceeb5836fe08574afa0e91">
<span class="new-file">
+
debian/tests/data/seq1.fa
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<li class="file-stats">
<a href="#2e0beabfbe895c1d5958a2f56191cba4c7991d40">
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debian/tests/data/seq2.fa
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="new-file">
+
debian/tests/run-unit-test
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</li>
</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Notes</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">how</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span><span class="mf" style="color: #099;">.</span></span>
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">This</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">running</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">provided</span> <span class="n" style="color: #333;">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"> <span class="n" style="color: #333;">sh</span> <span class="n" style="color: #333;">run</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">unit</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">test</span></span>
</pre>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">in</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">to</span> <span class="n" style="color: #333;">confirm</span> <span class="n" style="color: #333;">its</span> <span class="n" style="color: #333;">integrity</span><span class="mf" style="color: #099;">.</span></span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="php"></span>
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Notes</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">used</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">testing</span> </span>
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Files</span><span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: 600;">/*</span></span>
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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="php"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">The</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">myseq</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">fa</span><span class="p">,</span> <span class="n" style="color: #333;">seq1</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">fa</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">seq2</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">fa</span> <span class="n" style="color: #333;">were</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">testing</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">package</span><span class="mf" style="color: #099;">.</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="php"></span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">segemehl (0.3.4-4) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add test data</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Install docs</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Shruti Sridhar <shruti.sridhar99@gmail.com> Sun, 01 Aug 2021 16:07:41 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">segemehl (0.3.4-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team Upload.</span>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +11,10 @@ Files: debian/*</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Copyright: 2016-2018 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">License: GPL-3+</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Files: debian/tests/data</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Copyright: Shruti Sridhar <shruti.sridhar99@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">License: GPL-3+</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">License: GPL-3+</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> This program is free software: you can redistribute it and/or modify</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32"><strong>debian/docs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/README*</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/tests/run-unit-test</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/data/*</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#e2252398e1704cc2c1b4e3b253f203ab5cd8bcb7"><strong>debian/tests/data/myseq.fa</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">>myseq</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ATGCGACTCAGACGACGACGACGACGAGACTAAGCAGACATCAGCAGACGACGACGCATACGACGATA</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#95df921653cde4307aceeb5836fe08574afa0e91"><strong>debian/tests/data/seq1.fa</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">>index1</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ATGCATGCATGCATTTAGAGACAGCAGACGATACGACTACACAGCATCAACGACATACGACATCAGACGAACAAAAAAAAAAAAAGATCATCAGAATGGCATGGCATGACTCGACATCGACATCAGACATCAGAAATCAGACTAAGCATAGCATAGAATCAATACGACGACATAGATAGATAGATAAGCAGACTAAGCATACAGCACATAGCATAGACGAATAGCATACGACATAGAATAGATATCAGCA</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#2e0beabfbe895c1d5958a2f56191cba4c7991d40"><strong>debian/tests/data/seq2.fa</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">>index2</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ATGCTACGACGACGACGAGAAGAGAGAGAAAAAAAAAAATACGACATCAGACTACGACATACTACAGACTACAGCATCAGAATAG</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/2835fcd8e601071f5e3d3a4abac7af5fae357c29...6c607df4f452d425a634fae241f8a321c4f28a86#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>segemehl</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#do_stuff_to_test_package#</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell">segemehl <span class="nt" style="color: #000080;">-x</span> index.idx <span class="nt" style="color: #000080;">-d</span> seq1.fa</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell">segemehl <span class="nt" style="color: #000080;">-i</span> index.idx <span class="nt" style="color: #000080;">-d</span> seq1.fa <span class="nt" style="color: #000080;">-q</span> myseq.fa <span class="o" style="font-weight: 600;">></span> mymap.sam</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell">segemehl <span class="nt" style="color: #000080;">-S</span> <span class="nt" style="color: #000080;">-i</span> index.idx <span class="nt" style="color: #000080;">-d</span> seq1.fa <span class="nt" style="color: #000080;">-q</span> seq2.fa <span class="o" style="font-weight: 600;">></span> my.sngl.bed</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> <span class="s2" style="color: #d14;">"mymap.sam"</span> <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> <span class="s2" style="color: #d14;">"index.idx"</span> <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> <span class="s2" style="color: #d14;">"my.sngl.bed"</span> <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">exit </span>1 <span class="o" style="font-weight: 600;">&&</span> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"PASS Test"</span></span></pre>
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