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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/q2-diversity">Debian Med / q2-diversity</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-diversity/-/commit/57e5a99739203dc6a34323131d5a493128d6d77d">57e5a997</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-08-12T19:40:36+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci ] Compile JS sources as needed
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<strong><a href="https://salsa.debian.org/med-team/q2-diversity/-/commit/364822b1bfc0ba17ad69188279781d4f24730114">364822b1</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-08-12T19:45:43+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci] Do not run tests for now
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<h4>4 changed files:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#f9edd2463b2d6ae17d2807a165333128cbd2bc9d">
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+
debian/patches/0001-make-compatible-with-webpack4.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/q2-diversity/-/compare/6a462a18695cdd77ceb207b4764297dd801c3362...364822b1bfc0ba17ad69188279781d4f24730114#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,11 @@ Build-Depends: debhelper-compat (= 13),</td>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">nose</span> <span class="p"><</span><span class="c1" style="color: #998; font-style: italic;">!nocheck>,</span></span>
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14
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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">qiime</span> <span class="p">(>=</span> <span class="m" style="color: #099;">2019.10.0</span><span class="p">)</span> <span class="p"><</span><span class="c1" style="color: #998; font-style: italic;">!nocheck>,</span></span>
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<td class="old_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">q2</span><span class="p">-</span><span class="n" style="color: #333;">emperor</span> <span class="p"><</span><span class="c1" style="color: #998; font-style: italic;">!nocheck>,</span></span>
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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="new_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">q2</span><span class="p">-</span><span class="n" style="color: #333;">feature</span><span class="p">-</span><span class="n" style="color: #333;">table</span> <span class="p"><</span><span class="c1" style="color: #998; font-style: italic;">!nocheck></span></span>
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<td class="old_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">q2</span><span class="p">-</span><span class="n" style="color: #333;">feature</span><span class="p">-</span><span class="n" style="color: #333;">table</span> <span class="p"><</span><span class="c1" style="color: #998; font-style: italic;">!nocheck>,</span></span>
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<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">node</span><span class="p">-</span><span class="n" style="color: #333;">d3</span><span class="p">,</span></span>
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<td class="new_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">node</span><span class="p">-</span><span class="n" style="color: #333;">webpack</span><span class="p">,</span></span>
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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">node</span><span class="p">-</span><span class="n" style="color: #333;">uglifyjs</span><span class="p">-</span><span class="n" style="color: #333;">webpack</span><span class="p">-</span><span class="n" style="color: #333;">plugin</span><span class="p">,</span></span>
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<td class="new_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">node</span><span class="p">-</span><span class="n" style="color: #333;">babel</span><span class="p">-</span><span class="n" style="color: #333;">loader</span></span>
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17
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<td class="new_line diff-line-num" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.5.1</span></span>
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<td class="new_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Browser</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">q2</span><span class="p">-</span><span class="n" style="color: #333;">diversity</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Git</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">q2</span><span class="p">-</span><span class="n" style="color: #333;">diversity</span><span class="p">.</span><span class="n" style="color: #333;">git</span></span>
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<li id="f9edd2463b2d6ae17d2807a165333128cbd2bc9d">
<a href="https://salsa.debian.org/med-team/q2-diversity/-/compare/6a462a18695cdd77ceb207b4764297dd801c3362...364822b1bfc0ba17ad69188279781d4f24730114#f9edd2463b2d6ae17d2807a165333128cbd2bc9d"><strong>debian/patches/0001-make-compatible-with-webpack4.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: webpack.config.js and .babelrc are incompatible with webpack4 API and bable7 respectively, did relevant changes</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-08-12</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_diversity/_alpha/alpha_correlation_assets/webpack.config.js</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_diversity/_alpha/alpha_correlation_assets/webpack.config.js</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -1,38 +1,41 @@</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> var path = require('path');</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> var webpack = require('webpack');</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+const UglifyJsPlugin = require('uglifyjs-webpack-plugin');</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> module.exports = {</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mode: 'production',</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> entry: {</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> app: './src/main.js',</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- vendor: ['d3']</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> },</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> plugins: [</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.CommonsChunkPlugin('vendor', 'dist/vendor.bundle.js'),</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.UglifyJsPlugin({</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- compress: { warnings: false }</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }),</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.NoErrorsPlugin(),</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new UglifyJsPlugin({</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ uglifyOptions: {</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "warnings": false</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }),</span></span>
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<td class="new_line diff-line-num new" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new webpack.NoEmitOnErrorsPlugin(),</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> ],</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> output: {</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> path: __dirname,</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> filename: 'dist/bundle.js'</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> },</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> module: {</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- preLoaders: [</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ rules: [</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> {</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- test: /\.js$/,</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: "eslint-loader",</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exclude: /node_modules/</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ],</span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loaders: [</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: 'babel-loader',</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> exclude: /node_modules/,</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ use: [{</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ loader: 'babel-loader',</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> query: {</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- presets: ['es2015']</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ presets: ['@babel/preset-env']</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> }</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }]</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> }</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> ]</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"> },</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ resolve: {</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.']</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ },</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ resolveLoader: {</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.'],</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> };</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_diversity/_alpha/alpha_group_significance_assets/webpack.config.js</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_diversity/_alpha/alpha_group_significance_assets/webpack.config.js</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="p">@@ -1,38 +1,41 @@</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> var path = require('path');</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> var webpack = require('webpack');</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+const UglifyJsPlugin = require('uglifyjs-webpack-plugin');</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> </span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> module.exports = {</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mode: 'production',</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> entry: {</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"> app: './src/main.js',</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- vendor: ['d3']</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> },</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> plugins: [</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.CommonsChunkPlugin('vendor', 'dist/vendor.bundle.js'),</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.UglifyJsPlugin({</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- compress: { warnings: false }</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }),</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.NoErrorsPlugin(),</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new UglifyJsPlugin({</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ uglifyOptions: {</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "warnings": false</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }),</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new webpack.NoEmitOnErrorsPlugin(),</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"> ],</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> output: {</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> path: __dirname,</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"> filename: 'dist/bundle.js'</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"> },</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"> module: {</span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- preLoaders: [</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- test: /\.js$/,</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: "eslint-loader",</span></span>
</pre>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exclude: /node_modules/</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ],</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loaders: [</span></span>
</pre>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ rules: [</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"> {</span>
</pre>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: 'babel-loader',</span></span>
</pre>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"> exclude: /node_modules/,</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ use: [{</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ loader: 'babel-loader',</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"> query: {</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- presets: ['es2015']</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ presets: ['@babel/preset-env']</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"> }</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }]</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"> }</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> ]</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> },</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+resolve: {</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.']</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ },</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+resolveLoader: {</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.'],</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"> };</span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_diversity/_alpha/alpha_rarefaction_assets/webpack.config.js</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_diversity/_alpha/alpha_rarefaction_assets/webpack.config.js</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"><span class="p">@@ -1,38 +1,41 @@</span></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"> var path = require('path');</span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"> var webpack = require('webpack');</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+const UglifyJsPlugin = require('uglifyjs-webpack-plugin');</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"> </span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"> module.exports = {</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mode: 'production',</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> entry: {</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"> app: './src/main.js',</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- vendor: ['d3']</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"> },</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"> plugins: [</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.CommonsChunkPlugin('vendor', 'dist/vendor.bundle.js'),</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.optimize.UglifyJsPlugin({</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- compress: { warnings: false }</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }),</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- new webpack.NoErrorsPlugin(),</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new UglifyJsPlugin({</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ uglifyOptions: {</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "warnings": false</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }),</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ new webpack.NoEmitOnErrorsPlugin(),</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"> ],</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"> output: {</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"> path: __dirname,</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"> filename: 'dist/bundle.js'</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"> },</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"> module: {</span>
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<td class="new_line diff-line-num new" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- preLoaders: [</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ rules: [</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"> {</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- test: /\.js$/,</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: "eslint-loader",</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exclude: /node_modules/</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ],</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loaders: [</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- loader: 'babel-loader',</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"> exclude: /node_modules/,</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- query: {</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- presets: ['es2015']</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ use: [{</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ loader: 'babel-loader',</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ query: {</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ presets: ['@babel/preset-env']</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="diff"> }</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }]</span></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="diff"> }</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"> ]</span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="diff"> },</span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+resolve: {</span></span>
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<td class="new_line diff-line-num new" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.']</span></span>
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<td class="new_line diff-line-num new" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+},</span></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+resolveLoader: {</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ modules: ['/usr/lib/nodejs', '/usr/share/nodejs', '.'],</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+}</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="diff"> };</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_diversity/_alpha/alpha_group_significance_assets/.babelrc</span></span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_diversity/_alpha/alpha_group_significance_assets/.babelrc</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="diff"><span class="p">@@ -1,3 +1,3 @@</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="diff"> {</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- "presets": ["es2015"]</span></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "presets": ["@babel/preset-env"]</span></span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="diff"> }</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/q2_diversity/_alpha/alpha_rarefaction_assets/.babelrc</span></span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/q2_diversity/_alpha/alpha_rarefaction_assets/.babelrc</span></span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="diff"><span class="p">@@ -1,3 +1,3 @@</span></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="diff"> {</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- "presets": ["es2015"]</span></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "presets": ["@babel/preset-env"]</span></span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="diff"> }</span></pre>
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<a href="https://salsa.debian.org/med-team/q2-diversity/-/compare/6a462a18695cdd77ceb207b4764297dd801c3362...364822b1bfc0ba17ad69188279781d4f24730114#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">0001-make-compatible-with-webpack4.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/q2-diversity/-/compare/6a462a18695cdd77ceb207b4764297dd801c3362...364822b1bfc0ba17ad69188279781d4f24730114#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,14 +14,19 @@ export PYBUILD_BEFORE_INSTALL=rm -rvf {build_dir}/q2-diversity.egg-* \</td>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">override_dh_auto_build:</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> $(MAKE) all</span>
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18
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh_auto_build</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> cd q2_diversity/_alpha/alpha_correlation_assets && \</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> webpack --bail</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> cd q2_diversity/_alpha/alpha_group_significance_assets && \</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> webpack --bail</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> cd q2_diversity/_alpha/alpha_rarefaction_assets && \</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> webpack --bail</span>
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19
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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20
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">#FIXME: Delaying true testing to autopkgtests since QIIME2 module cannot be registered</span>
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21
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"># at build time.</span>
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22
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">override_dh_auto_test:</span>
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23
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">dh_auto_test -- -s custom --test-args="cd {build_dir}; PYTHONPATH=`pwd` py.test-3 --cov=q2_diversity</span>"</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> <span class="idiff left right">echo "I: Do not run tests for now</span>"</span>
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25
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">endif</span>
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26
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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27
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_auto_clean:</span>
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