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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/471bc4a37b09da38baed2ae3ffce7604dd8f5806">471bc4a3</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-08-15T13:42:19+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/471bc4a37b09da38baed2ae3ffce7604dd8f5806#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 15 Aug 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 15 Aug 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 178 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 104 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 51 | {imaging,practice,his,covid-19,oncology,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 32 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 33 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> htsjdk | 28 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> amide | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | 26 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 2<span class="idiff">2</span> | {<span class="idiff right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left">htsjdk</span> | 2<span class="idiff">5</span> | {<span class="idiff right">bio-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> odin | 21 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 20 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> minc-tools | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> nifticlib | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> orthanc-webviewer | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> insighttoolkit4 | 15 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dicomnifti | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> gnumed-server | 12 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> gnumed-server | 13 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> nifti2dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> busco | 8 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> libminc | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> salmid | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> busco | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> nifticlib | 7 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +42,6 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> oscar | 5 | {tools,data,practice} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -55,6 +54,7 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> nipype | 4 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> obitools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> oscar | 4 | {tools,data,practice} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> saint | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -67,6 +67,7 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> bio-tradis | 3 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> bitseq | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> embassy-domalign | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> embassy-domsearch | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,7 +78,6 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> ngs-sdk | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> paraclu | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> piler | 3 | {bio} | </span>
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> proalign | 3 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,8 +91,6 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> bamkit | 2 | {bio,covid-19} | </span>
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> biomaj3-cli | 2 | {cloud} | </span>
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93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> canu | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> cat-bat | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> clonalframeml | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,6 +108,7 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> libncl | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> mhap | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> orthanc-python | 2 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,7 +124,6 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> samblaster | 2 | {covid-19,bio} | </span>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> sga | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> soapaligner | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> soapsnp | 2 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> spaced | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,8 +134,10 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> yaha | 2 | {bio} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> bbmap | 1 | {bio,covid-19} | </span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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139
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> bustools | 1 | {bio,covid-19} | </span>
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140
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> cufflinks | 1 | {cloud,bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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142
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -167,6 +167,7 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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167
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> python-bcbio-gff | 1 | {bio-dev} | </span>
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168
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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169
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> shovill | 1 | {bio,covid-19} | </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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170
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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171
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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172
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> skewer | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,7 +183,6 @@ Last-Update: Sun, 15 Aug 2021 01:42:04 +0000</td>
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182
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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183
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> bmtk | 0 | {psychology} | </span>
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184
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> cufflinks | 0 | {cloud,bio} | </span>
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186
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> eegdev | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/471bc4a37b09da38baed2ae3ffce7604dd8f5806#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="">Last-Update: Sun, 15 Aug 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="">Last-Update: Sun, 15 Aug 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">5</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang=""></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang=""> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+-------------------------+------------------------</span>
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