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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/5e44499e8104843f0fdd81e427bea803a0cb5fb5">5e44499e</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-08-18T12:17:51+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci] d/p/do-not-enforce-avx2.patch: Remove usage of -mavx2 by default
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<h4>2 changed files:</h4>
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<a href="#5daba7e44eda2850e9cdb215d915e62bf69a3420">
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+
debian/patches/do-not-enforce-avx2.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="5daba7e44eda2850e9cdb215d915e62bf69a3420">
<a href="https://salsa.debian.org/med-team/rna-star/-/commit/5e44499e8104843f0fdd81e427bea803a0cb5fb5#5daba7e44eda2850e9cdb215d915e62bf69a3420"><strong>debian/patches/do-not-enforce-avx2.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Do not enforce -mavx2</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992270</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Last-Update: 2021-08-18</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/source/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/source/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -30,7 +30,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> # Defaults, can be overridden by make arguments or environment</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> CXXFLAGS ?= -pipe -Wall -Wextra</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> CFLAGS ?= -pipe -Wall -Wextra -O3</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CXXFLAGS_SIMD ?= -mavx2</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # Unconditionally set essential flags and optimization options</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> CXXFLAGS_common := -std=c++11 -fopenmp $(COMPTIMEPLACE) $(CCFLAGS_common_add)</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -92,7 +91,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> opal/opal.o : opal/opal.cpp opal/opal.h</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> cd opal && \</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) -c -I./ -std=c++11 $(CPPFLAGS) $(CXXFLAGS) $(CXXFLAGSextra) $(CXXFLAGS_SIMD) opal.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) -c -I./ -std=c++11 $(CPPFLAGS) $(CXXFLAGS) $(CXXFLAGSextra) opal.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> .PHONY: clean</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> clean:</span></pre>
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<a href="https://salsa.debian.org/med-team/rna-star/-/commit/5e44499e8104843f0fdd81e427bea803a0cb5fb5#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ donotuse_own_htslib.patch</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">mips_shm_noreserve.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">reproducible.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">mathRoutinesNotInScope.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">do-not-enforce-avx2.patch</span></pre>
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