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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/imagej">Debian Med / imagej</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/imagej/-/commit/970001b5198c599e62c27d0edd079ee04d8fc454">970001b5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-08-20T11:13:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/extra/imagej: adjust "free" parsing
For a couple of years, "free" changed output format. This change
captures again available memory for commit by the java virtual
machine.
Closes: #986041
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/imagej/-/commit/557a78a5e9c461ec20b4df057ed6a270fbcb6acb">557a78a5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-08-20T11:24:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: imagej depends on procps
If the "free" command is unavailable, the wrapper "imagej" will output
spurious messages about missing "free" command. This will not prevent
the "imagej" command to run, as the superficial autopkgtest does not
fail, apparently, but this probably won't go unnoticed.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/imagej/-/commit/adf5d5917eb8f7acfe8a0d3c8c56f45f48b76c5f">adf5d591</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-08-20T12:32:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#b936613069c585fbaeef73c0b7942a0be28941f6">
debian/extra/imagej
</a>
</li>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/imagej/-/compare/99944120d515e2e403dba435a982a767bcf5ad22...adf5d5917eb8f7acfe8a0d3c8c56f45f48b76c5f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">imagej</span> <span class="p">(</span><span class="m" style="color: #099;">1.53</span><span class="n" style="color: #333;">k</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">Upload</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">d</span><span class="p">/</span><span class="n" style="color: #333;">extra</span><span class="p">/</span><span class="n" style="color: #333;">imagej</span><span class="p">:</span> <span class="n" style="color: #333;">adjust</span> <span class="s2" style="color: #d14;">"free"</span> <span class="n" style="color: #333;">parsing</span> <span class="p">(</span><span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">986041</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">d</span><span class="p">/</span><span class="n" style="color: #333;">control</span><span class="p">:</span> <span class="n" style="color: #333;">imagej</span> <span class="n" style="color: #333;">depends</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">procps</span><span class="p">;</span> <span class="n" style="color: #333;">fixes</span> <span class="n" style="color: #333;">spurious</span> <span class="n" style="color: #333;">missing</span> <span class="s2" style="color: #d14;">"free"</span> <span class="nf" style="color: #900; font-weight: 600;">command</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">messages</span> <span class="n" style="color: #333;">when</span> <span class="s2" style="color: #d14;">"free"</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">available</span><span class="p">.</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="p">--</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">É</span><span class="n" style="color: #333;">tienne</span> <span class="n" style="color: #333;">Mollier</span> <span class="p"><</span><span class="n" style="color: #333;">emollier</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Fri</span><span class="p">,</span> <span class="m" style="color: #099;">20</span> <span class="n" style="color: #333;">Aug</span> <span class="m" style="color: #099;">2021</span> <span class="m" style="color: #099;">12</span><span class="p">:</span><span class="m" style="color: #099;">29</span><span class="p">:</span><span class="m" style="color: #099;">49</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">imagej</span> <span class="p">(</span><span class="m" style="color: #099;">1.53</span><span class="n" style="color: #333;">k</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">Upload</span><span class="p">.</span></span>
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<a href="https://salsa.debian.org/med-team/imagej/-/compare/99944120d515e2e403dba435a982a767bcf5ad22...adf5d5917eb8f7acfe8a0d3c8c56f45f48b76c5f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,6 +20,7 @@ Architecture: all</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Depends: ${java:Depends},</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> default-jre | java6-runtime,</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> procps,</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> libij-java</span>
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Recommends: ${java:Recommends}</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Description: Image processing program with a focus on microscopy images</span>
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<a href="https://salsa.debian.org/med-team/imagej/-/compare/99944120d515e2e403dba435a982a767bcf5ad22...adf5d5917eb8f7acfe8a0d3c8c56f45f48b76c5f#b936613069c585fbaeef73c0b7942a0be28941f6"><strong>debian/extra/imagej</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,13 +102,13 @@ elif [[ `uname` == 'Linux' ]] ; then</td>
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102
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[[</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">uname</span> <span class="nt" style="color: #000080;">-m</span><span class="sb" style="color: #d14;">`</span> <span class="o" style="font-weight: 600;">==</span> <span class="s1" style="color: #d14;">'x86_64'</span> <span class="o" style="font-weight: 600;">]]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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103
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">java_path</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">ij_path</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">/jre64/bin/java"</span></span>
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104
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="shell"> <span class="nv" style="color: #008080;">max_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == 2 {fmem=int($2 / 1024); if (fmem < 8000) {print fmem} else {print 8000}}'</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="shell"> <span class="nv" style="color: #008080;">free_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == <span class="idiff left">3</span> {fmem=int($<span class="idiff right">4</span> / 1024); if (fmem < 8000) {print fmem} else {print 8000}}'</span><span class="sb" style="color: #d14;">`</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="shell"> <span class="nv" style="color: #008080;">free_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == <span class="idiff left">2</span> {fmem=int($<span class="idiff right">7</span> / 1024); if (fmem < 8000) {print fmem} else {print 8000}}'</span><span class="sb" style="color: #d14;">`</span></span>
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106
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="shell"> <span class="nv" style="color: #008080;">mem</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">free_mem</span><span class="k" style="font-weight: 600;">}</span>/3<span class="k" style="font-weight: 600;">*</span>2</span>
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107
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span> <span class="nv" style="color: #008080;">$mem</span> <span class="o" style="font-weight: 600;">></span> <span class="nv" style="color: #008080;">$default_mem</span> <span class="o" style="font-weight: 600;">||</span> <span class="nv" style="color: #008080;">$mem</span> < <span class="nv" style="color: #008080;">$min_mem</span> <span class="o" style="font-weight: 600;">))</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then </span><span class="nv" style="color: #008080;">mem</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$default_mem</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">fi</span></span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="shell"><span class="k" style="font-weight: 600;"> else</span></span>
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109
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">java_path</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">ij_path</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">/jre/bin/java"</span></span>
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="shell"> <span class="nv" style="color: #008080;">max_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == 2 {fmem=int($2 / 1024); if (fmem < 1800) {print fmem} else {print 1800}}'</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="shell"> <span class="nv" style="color: #008080;">free_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == <span class="idiff left">3</span> {fmem=int($<span class="idiff right">4</span> / 1024); if (fmem < 1800) {print fmem} else {print 1800}}'</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="shell"> <span class="nv" style="color: #008080;">free_mem</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>free | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'NR == <span class="idiff left">2</span> {fmem=int($<span class="idiff right">7</span> / 1024); if (fmem < 1800) {print fmem} else {print 1800}}'</span><span class="sb" style="color: #d14;">`</span></span>
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="shell"> <span class="nv" style="color: #008080;">mem</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">free_mem</span><span class="k" style="font-weight: 600;">}</span>/3<span class="k" style="font-weight: 600;">*</span>2</span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">((</span> <span class="nv" style="color: #008080;">$mem</span> <span class="o" style="font-weight: 600;">></span> <span class="nv" style="color: #008080;">$default_mem</span> <span class="o" style="font-weight: 600;">||</span> <span class="nv" style="color: #008080;">$mem</span> < <span class="nv" style="color: #008080;">$min_mem</span> <span class="o" style="font-weight: 600;">))</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then </span><span class="nv" style="color: #008080;">mem</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$default_mem</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">fi</span></span>
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114
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="shell"><span class="k" style="font-weight: 600;"> fi</span></span>
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