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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/beast2-mcmc">Debian Med / beast2-mcmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/eb441b086711e2ac6b3802365ba5cf107e8c545c">eb441b08</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-08-23T16:40:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Lowering heap size for 32 bit machines
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/79f8ccc0de62d52fbf572d759737a8ae3015b4aa">79f8ccc0</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-08-23T17:21:16+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7182e78c1439266ecc572cd2991994a1f31a4747">
debian/bin/beast2-mcmc
</a>
</li>
<li class="file-stats">
<a href="#939b2b353d262b1085c2901127997f8a459ebbe0">
debian/bin/beauti2
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<li class="file-stats">
<a href="#96965d545106c5be1c679152715c1348757280df">
debian/bin/treeannotator2
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<h4>Changes:</h4>
<li id="7182e78c1439266ecc572cd2991994a1f31a4747">
<a href="https://salsa.debian.org/med-team/beast2-mcmc/-/compare/35ac7c9e286e5f0e2198a52b2bce15d6a476c620...79f8ccc0de62d52fbf572d759737a8ae3015b4aa#7182e78c1439266ecc572cd2991994a1f31a4747"><strong>debian/bin/beast2-mcmc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,13 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># upstream has set 1024</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># I had use cases that required more than 2048</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>3072</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">thisArch</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">arch</span><span class="si" style="color: #d14;">)</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">thisArch</span><span class="p">%86</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$thisArch</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># We found "86" at the end of $(arch), so we lower MAXMEM to</span></span>
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># 1.9 GB for a 32 bit machine.</span></span>
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>1946</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Remark: There should be no need to specify CLASSPATH</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># explicitely because it is set in manifest - however, this</span></span>
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<li id="939b2b353d262b1085c2901127997f8a459ebbe0">
<a href="https://salsa.debian.org/med-team/beast2-mcmc/-/compare/35ac7c9e286e5f0e2198a52b2bce15d6a476c620...79f8ccc0de62d52fbf572d759737a8ae3015b4aa#939b2b353d262b1085c2901127997f8a459ebbe0"><strong>debian/bin/beauti2</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,13 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># upstream has set 1024</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># I had use cases that required more than 2048</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>3072</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">thisArch</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">arch</span><span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">thisArch</span><span class="p">%86</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$thisArch</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># We found "86" at the end of $(arch), so we lower MAXMEM to</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># 1.9 GB for a 32 bit machine.</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>1946</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Remark: There should be no need to specify CLASSPATH</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># explicitely because it is set in manifest - however, this</span></span>
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<a href="https://salsa.debian.org/med-team/beast2-mcmc/-/compare/35ac7c9e286e5f0e2198a52b2bce15d6a476c620...79f8ccc0de62d52fbf572d759737a8ae3015b4aa#96965d545106c5be1c679152715c1348757280df"><strong>debian/bin/treeannotator2</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,13 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># upstream has set 1024</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># I had use cases that required more than 2048</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>3072</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">thisArch</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">arch</span><span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">thisArch</span><span class="p">%86</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$thisArch</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># We found "86" at the end of $(arch), so we lower MAXMEM to</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># 1.9 GB for a 32 bit machine.</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="nv" style="color: #008080;">MAXMEM</span><span class="o" style="font-weight: 600;">=</span>1946</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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6
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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7
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Remark: There should be no need to specify CLASSPATH</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># explicitely because it is set in manifest - however, this</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">beast2-mcmc (2.6.6+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Lowering heap size on 32 bit architectures</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> Mon, 23 Aug 2021 16:40:39 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">beast2-mcmc (2.6.6+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * New upstream version 2.6.6+dfsg</span>
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