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<h3>
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/biobambam2">Debian Med / biobambam2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/09fe9354386488678006750e7c7e88864a70fbd5">09fe9354</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-06-29T22:17:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.182+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/7709cfd66811220bcee4b01be8a594502fa4fa1e">7709cfd6</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-08-24T12:48:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.183+ds</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#0815eab16a52d3bd513af16e288f25eb877061dd">
src/biobambam2/ReadHeader.cpp
</a>
</li>
<li class="file-stats">
<a href="#f6d6a44a2d4c9132f5653efa0c6bda8746270a3f">
src/programs/bam12split.cpp
</a>
</li>
<li class="file-stats">
<a href="#3357db5c537ef273c0208887b5f0500fde233036">
src/programs/bam12strip.cpp
</a>
</li>
<li class="file-stats">
<a href="#954809bf0771d6c04b2685b9bced1c4de85e0da0">
<span class="new-file">
+
src/programs/bamadapterhistogram.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7c2ea143f08ee3aac61e9161b23b3c336f21b325">
src/programs/bamalignfrac.1
</a>
</li>
<li class="file-stats">
<a href="#0e4693749e6e05bd548155f7207f9b51ea66e3f8">
src/programs/bamauxmerge.1
</a>
</li>
<li class="file-stats">
<a href="#269dd126a07ef4d2aae3e8585d3b9f7d7c6d7365">
src/programs/bamauxmerge.cpp
</a>
</li>
<li class="file-stats">
<a href="#035e3c1b0f312b337665695951e7d7136486aa0e">
src/programs/bamauxmerge2.1
</a>
</li>
<li class="file-stats">
<a href="#3b06d7c0df977f4386ad9e6694957bfbc058149f">
src/programs/bamauxmerge2.cpp
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</li>
<li class="file-stats">
<a href="#e5cb3e3a7ae5d93708da3cbc60a7378a64d1183f">
src/programs/bamauxsort.cpp
</a>
</li>
<li class="file-stats">
<a href="#583debd8b4fe3b47cf1933f456c8614f164beb75">
src/programs/bamcollate2.1
</a>
</li>
<li class="file-stats">
<a href="#6e39795f88cd8de5ba58c38c658bcd3a7717e6f6">
src/programs/bamconsensus.1
</a>
</li>
<li class="file-stats">
<a href="#69564be010fba721dc185239c85c9d18ebefad83">
src/programs/bamfastcat.cpp
</a>
</li>
<li class="file-stats">
<a href="#0b20c6e030426637a6eb018a0148e5caa5d1c4c8">
src/programs/bamfilteraux.cpp
</a>
</li>
<li class="file-stats">
<a href="#2bcca0119361ca8be7efd810c71e6bb649b2407e">
src/programs/bamfilterk.cpp
</a>
</li>
<li class="file-stats">
<a href="#0ca2108c540bc79ea6ba65027104f39309c8c2da">
src/programs/bamfilternames.cpp
</a>
</li>
<li class="file-stats">
<a href="#91b677d9fdeb03bd528f14f043e3c34241608a85">
src/programs/bamfilterrefid.cpp
</a>
</li>
<li class="file-stats">
<a href="#ea3b93ee0fc6ecc88a4c308d9e775460cc069a19">
src/programs/bamfilterrg.cpp
</a>
</li>
<li class="file-stats">
<a href="#f6b22330facbdb99232cfb2d0e56bb7d6838207d">
src/programs/bamfixmatecoordinates.cpp
</a>
</li>
<li class="file-stats">
<a href="#271e49033ee905cf5f07b443a94aa2397f1dcfa6">
src/programs/bamfixmateinformation.cpp
</a>
</li>
<li class="file-stats">
<a href="#825c9dbbfa9b91c5079dfc612fedaf896fe6bfef">
src/programs/bamflagsplit.cpp
</a>
</li>
<li class="file-stats">
<a href="#543b7d99bcae081cdef943534527efa6619e48f8">
src/programs/bammarkduplicates.1
</a>
</li>
<li class="file-stats">
<a href="#e448b0b2a790816195186a40d0738a2b3d5efb4c">
src/programs/bammarkduplicates2.1
</a>
</li>
<li class="file-stats">
<a href="#f7e77d0a392ad3f8f0ae89b643f830c58ff8b31a">
src/programs/bammarkduplicatesopt.1
</a>
</li>
<li class="file-stats">
<a href="#06ad635dfde9334a0916dcbcf432dad862a1cf8a">
src/programs/bammaskflags.1
</a>
</li>
<li class="file-stats">
<a href="#c799099135c2186b81358d8584c77ffe42ef88f5">
src/programs/bammdnm.1
</a>
</li>
<li class="file-stats">
<a href="#adda26115eb904dfde73f9af842d611a484dd96d">
src/programs/bammdnm.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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