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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/d482898df35710ff14413712f36f8cac7cd945b5">d482898d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-25T19:32:00+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.32+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/3aee55822a61c274f9071137c11242aba132437d">3aee5582</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-25T19:32:10+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.32+dfsg'
Update to upstream version '2.5.32+dfsg'
with Debian dir e1d1b5982fb24400192305a719416748350afdd4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/d46aa36812efdf749f19f555526f5fba2153fad8">d46aa368</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-25T19:38:52+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh d/p/use_debian_sqlite.patch, do not impose ZLIB changes on the same patch so as to avoid confusion
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/0be77009f886a2209c9907cc4804d227818e9dd1">0be77009</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-25T19:44:06+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/set-zlib-after-setting-default-libs.patch: Check for existence of ZLIB *after* DEFAULT_LIBRARIES have been set
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/56826e5714bca2b37ee3c510b06dcb0a387781fb">56826e57</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-25T19:45:13+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#fae4045e7c53be7e233f4d504a872eab7bffa150">
<span class="new-file">
+
debian/patches/set-zlib-after-setting-default-libs.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
</a>
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<li class="file-stats">
<a href="#0570609ee9b4163f9738e06f4afb1114320867f5">
res/TemplateBatchFiles/AddABias.ibf
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<li class="file-stats">
<a href="#1c34e5e2341f7334d9146eb8e633fd86fdc01c3d">
<span class="new-file">
+
res/TemplateBatchFiles/DirectionalREL.bf
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<li class="file-stats">
<a href="#595b42362bc80e51259da598ac8ff2dd32cd7358">
res/TemplateBatchFiles/GARD.bf
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<li class="file-stats">
<a href="#4ed0809c2483f5150cdfd2c3bf07d212387406d0">
res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
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<li class="file-stats">
<a href="#f029f7293cd2f0d6999ed6bdfd41727a79f56162">
res/TemplateBatchFiles/SelectionAnalyses/FADE.bf
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<li class="file-stats">
<a href="#817efc81f1180519a6136b50a447433f20cf679d">
res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
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<li class="file-stats">
<a href="#428ab1297972e0944fd35b5136d40326dd840dcb">
res/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
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<li class="file-stats">
<a href="#af43f80c500c4a3acf886ebcfd048a6a7a3cf361">
res/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
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<a href="#bc98d7300147ce39ef8ee0f9b35f3252bebd01d2">
res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
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<a href="#80cb7c212661a2afbd05c16dce9f84f45709578e">
res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
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<li class="file-stats">
<a href="#cf5243a3058ebeab74574f8cd2c771cd63a43208">
res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
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<a href="#13df3044c13d443b9b6ad8712b47d3bc84725272">
res/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
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<li class="file-stats">
<a href="#43faaf1f56e02d91be5b281472029a32276f7b4c">
res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
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<li class="file-stats">
<a href="#48abec8e0d198814ad3898dd7c82ef8b52eef776">
res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
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<li class="file-stats">
<a href="#c259485f7f96dc2ad350d5448508de915c6a9885">
res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
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<li class="file-stats">
<a href="#c079be28c5231888d711d5c41d1be180223dfce6">
res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
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<li class="file-stats">
<a href="#5162429bd3f362a69890c6b040d4be37e11a6308">
res/TemplateBatchFiles/files.lst
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<a href="#c50a9ebb34fca832759d3d11698588f8851c99cb">
res/TemplateBatchFiles/libv3/UtilityFunctions.bf
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<li class="file-stats">
<a href="#5dfec713e3892a936e8b5a63db56c03bee3ec252">
res/TemplateBatchFiles/libv3/all-terms.bf
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<li class="file-stats">
<a href="#94156df91590185798157c724050369c6294262f">
res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
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<li class="file-stats">
<a href="#c7933e171033f4eac9d83419583cca5474f9266c">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
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<li class="file-stats">
<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c">
src/core/global_things.cpp
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<li class="file-stats">
<a href="#7277ab70f1a79733638d6141d1cb1d3f8b9c26c2">
src/core/include/likefunc.h
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</li>
<li class="file-stats">
<a href="#2a8dd324ded753b0b3c559ac3950a2881ccd7a93">
src/core/likefunc.cpp
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<li class="file-stats">
<a href="#81843dd3cf849d08e0f197d837dd373534c7c756">
src/core/matrix.cpp
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</ul>
<h5>The diff was not included because it is too large.</h5>
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<a href="https://salsa.debian.org/med-team/hyphy/-/compare/5962906e7730ce0afd1374281cc747aa5d2d2790...56826e5714bca2b37ee3c510b06dcb0a387781fb">View it on GitLab</a>.
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