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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/820aca4f7b9e3f8c5f9878e5d31c1f7860b31809">820aca4f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-08-26T01:35:43+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove fix-build-on-non-x86.patch
The problem has been solved upstream.
</pre>
</li>
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<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/34947d133447926d3d52036f53f10a5119413984">34947d13</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2021-08-26T01:42:41+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add fix-build-on-non-x86.patch
Fixes build failure on arm64 and ppc64el, among other things.
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/a6b5aae3d73f420c0a45c15fe7e4fdbc480da842">a6b5aae3</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2021-08-26T01:44:27+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">dep3 header (stub)
Gbp-Dch: ignore
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<h4>3 changed files:</h4>
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<a href="#ef5666b75b8aa16c6a168796c33a2a32cbbfb303">
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+
debian/patches/fix-build-on-non-x86.patch
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−
debian/patches/fix-test-on-32bits.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="ef5666b75b8aa16c6a168796c33a2a32cbbfb303">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/28f78193f25647f705d98be8085a7afc1d0e492b...a6b5aae3d73f420c0a45c15fe7e4fdbc480da842#ef5666b75b8aa16c6a168796c33a2a32cbbfb303"><strong>debian/patches/fix-build-on-non-x86.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: fix build failures on non-x86 platforms</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Étienne Mollier <emollier@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: <URL|no|not-needed, useless if you have a Bug field, optional></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2021-08-26</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libmaus2.orig/src/libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libmaus2/src/libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -312,7 +312,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> };</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> libmaus2::lcs::AlignmentOneAgainstManyAVX2::AlignmentOneAgainstManyAVX2()</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> : context(new AlignmentOneAgainstManyAVX2Context,[](auto p){delete reinterpret_cast<AlignmentOneAgainstManyAVX2Context *>(p);})</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="p">@@ -324,6 +323,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> throw lme;</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> void libmaus2::lcs::AlignmentOneAgainstManyAVX2::process(</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> uint8_t const * qa,</span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/28f78193f25647f705d98be8085a7afc1d0e492b...a6b5aae3d73f420c0a45c15fe7e4fdbc480da842#c9104c993096f4cd26431d43c7968739446feb1c"><strong>debian/patches/fix-test-on-32bits.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: fix test breaking due to type mismatch on 32 bits platforms</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> Note: the upstream author adopted a different approach, so don't forget to</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"> remove this patch on next version.</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="p">Author: Étienne Mollier <emollier@debian.org></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">Forwarded: https://gitlab.com/german.tischler/libmaus2/-/issues/35</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">Last-Update: 2021-06-27</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="p">Applied-Upstream: 2.0.792</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libmaus2.orig/src/test/testnplself.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libmaus2/src/test/testnplself.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="p">@@ -66,8 +66,8 @@</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> libmaus2::lcs::NPLSelf np;</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- std::size_t const ab = 0;</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- std::size_t const bb = 1;</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ std::uint64_t const ab = 0;</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ std::uint64_t const bb = 1;</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> np.np(</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> a.begin()+ab,a.end(),</span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/28f78193f25647f705d98be8085a7afc1d0e492b...a6b5aae3d73f420c0a45c15fe7e4fdbc480da842#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">fix-<span class="idiff left right">test-on-32bits</span>.patch</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix-<span class="idiff left right">build-on-non-x86</span>.patch</span></pre>
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