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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/jellyfish1">Debian Med / jellyfish1</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/jellyfish1/-/commit/cef7c24b4cff3b9c405ef70a131803a383aee70d">cef7c24b</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-29T03:21:43+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add changes to 1.1.11-5 Upload
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/jellyfish1/-/commit/2a2270845b0d186ecf8093428e6810204ac4ea47">2a227084</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-08-29T03:30:32+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Get package building with autoconf 2.70
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<h4>8 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
debian/manpages
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<li class="file-stats">
<a href="#6d5507768ac8975f221ead23baef90cb894ce802">
<span class="new-file">
+
debian/patches/autoconf.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
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+
debian/salsa-ci.yml
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">jellyfish1 (1.1.11-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-</span>
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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> update)</span>
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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 26 Nov 2020 07:52:51 +0100</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">jellyfish1 (1.1.11-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * debhelper 11</span>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,12 @@ Uploaders: Shaun Jackman <sjackman@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (<span class="idiff left">></span>= 1<span class="idiff right">1~</span>)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left">-compat</span> (= 1<span class="idiff right">3</span>)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.1</span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/jellyfish1</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/jellyfish1.git</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Homepage: http://www.cbcb.umd.edu/software/jellyfish/</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Homepage: https://www.cbcb.umd.edu/software/jellyfish/</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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12
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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13
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: jellyfish1</span>
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14
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#68e0b13744e158347bfd74ebaaca667435f07d14"><strong>debian/manpages</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">d<span class="idiff left right">oc/jellyfish.man</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">d<span class="idiff left right">ebian/tmp/usr/share/man/man1/*</span></span></pre>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#6d5507768ac8975f221ead23baef90cb894ce802"><strong>debian/patches/autoconf.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Fix macros in configure.ac, and avoid repeating same macroto get it building with autoconf 2.70</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978842</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2021-08-29</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/configure.ac</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/configure.ac</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -5,7 +5,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> AM_SILENT_RULES([yes])</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> AC_CONFIG_SRCDIR([jellyfish])</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> AC_CONFIG_HEADERS([config.h])</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-AC_CONFIG_MACRO_DIR([m4])</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> AC_PROG_LIBTOOL</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # Change default compilation flags</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -26,9 +25,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> )</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> AC_ARG_VAR([MD5], [Path to md5 hashing program])</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-AS_IF([test "x$MD5" = "x"], AC_CHECK_PROG([MD5], [md5sum], [md5sum]), [])</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-AS_IF([test "x$MD5" = "x"], AC_CHECK_PROG([MD5], [md5], [md5 -r]), [])</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-AS_IF([test "x$MD5" = "x"], AC_MSG_ERROR([Could not find md5 hashing program in your path]), [])</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+AS_IF([test "x$MD5" = "x"], [AC_CHECK_PROG([MD5], [md5sum], [md5sum])], [])</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+AS_IF([test "x$MD5" = "x"], [AC_CHECK_PROG([MD5], [md5], [md5 -r])], [])</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+AS_IF([test "x$MD5" = "x"], [AC_MSG_ERROR([Could not find md5 hashing program in your path])], [])</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> AC_ARG_WITH([sse],</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> [AS_HELP_STRING([--with-sse], [enable SSE])],</span></pre>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">man</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">arm64.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">mips.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">autoconf.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,12 +35,15 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> find debian -name "*.la" -delete</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> find debian -name "*.so" -delete</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> find debian -name "pkgconfig" -type d | xargs rm -rf</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> # there is no development package for this version any more - remove header files to keep dh_missing happy</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> rm -rf debian/tmp/usr/include/jellyfish*</span>
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_installman:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> dh_installman</span>
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41
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> mv debian/$(DEB_SOURCE)/usr/share/man/man1/jellyfish.1 debian/$(DEB_SOURCE)/usr/share/man/man1/jellyfish1.1</span>
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42
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"></span>
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43
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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44
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> # dh_auto_test && true</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> echo "****************************************************** do not test for the moment ******************************************************"</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"># jellyfish contains a *really* big test which should *not* run on autobuilders</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,3 +51,4 @@ override_dh_auto_test:</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"># uncommenting the following.</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">#override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"># BIG=1 dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">endif</span></pre>
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<a href="https://salsa.debian.org/med-team/jellyfish1/-/compare/d3b8af119cf6825968a67ddd4eb362303fb7f251...2a2270845b0d186ecf8093428e6810204ac4ea47#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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