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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/spades">Debian Med / spades</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/82063d64599b06757f5c74a52a18eb907b7e77bd">82063d64</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-08-28T20:07:58+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.15.3+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#ae55101b54ce2616006582a65f21f81a27f56ef0">
assembler/VERSION
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<li class="file-stats">
<a href="#a9849095d161d6172a4b8c397180ac07a1c37ec4">
assembler/changelog.html
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<li class="file-stats">
<a href="#2467163558fc3d4a50c531e961d8ec1c94ae725b">
assembler/configs/debruijn/config.info
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<li class="file-stats">
<a href="#d7d44de08d105ed88b35aea932c5e60a0b47e007">
assembler/configs/debruijn/rna_mode.info
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<li class="file-stats">
<a href="#a40b59c80ea4241632800b902b400a827fc03aee">
<span class="deleted-file">
−
assembler/coronaspades.py
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<a href="#a40b59c80ea4241632800b902b400a827fc03aee">
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+
assembler/coronaspades.py
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<li class="file-stats">
<a href="#1cc9eb43a761f684af3c1249b75a5a8f39b3ebe6">
assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c
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<li class="file-stats">
<a href="#fe7fdbbf8b2079ee15a0add300260abc27048a3e">
assembler/manual.html
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<li class="file-stats">
<a href="#344b2fb1cad0dee33bd7c516959e0ec2227bd1bd">
assembler/spades.py
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<li class="file-stats">
<a href="#dcd694f38b9d988eef66a5f4f147c3bf07985834">
assembler/src/cmake/pack.cmake
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<li class="file-stats">
<a href="#1d2d1a82bf13198a433f38709246dc932d849171">
assembler/src/common/assembly_graph/dijkstra/dijkstra_helper.hpp
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<li class="file-stats">
<a href="#9da2c7d39e9d68b630040067bc9122c46a9cf551">
assembler/src/common/assembly_graph/dijkstra/neighbours_iterator.hpp
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<li class="file-stats">
<a href="#057bad29f1a2fa18b0387a7f6eb7105a23b905a2">
assembler/src/common/assembly_graph/paths/mapping_path.hpp
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<li class="file-stats">
<a href="#58ce2ffa248f1ad2f9be7723bc352a4e72b903ef">
assembler/src/common/io/dataset_support/dataset_readers.cpp
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<li class="file-stats">
<a href="#a045358d78a7efe478844fb0704fe67ec3f6ecbe">
assembler/src/common/io/dataset_support/dataset_readers.hpp
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<li class="file-stats">
<a href="#47a3131ac991c0858a9b2b6e4dadda0ea0ffa734">
assembler/src/common/io/dataset_support/read_converter.cpp
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<a href="#08f04aa9a386b7b23486b5614d7836ac19cb6027">
assembler/src/common/io/reads/io_helper.cpp
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<a href="#66c57eb41c14d7e1393abdf2c898dc0c8fa7ad28">
assembler/src/common/io/reads/io_helper.hpp
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<li class="file-stats">
<a href="#c5c537e747d47533c497f99fb47343bfa25a209b">
assembler/src/common/io/reads/osequencestream.hpp
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<li class="file-stats">
<a href="#d63e03fc0d674b436367b358a1666fa56d98b124">
assembler/src/common/math/xmath.h
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<li class="file-stats">
<a href="#b749ef5dace1f739e065c5a449f4920691125551">
assembler/src/common/modules/alignment/long_read_mapper.cpp
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<li class="file-stats">
<a href="#74577c43b59fdf102ff0a5cbb60a901cd6ca82f7">
assembler/src/common/modules/alignment/pacbio/pac_index.hpp
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<li class="file-stats">
<a href="#243d4886d48b6e545b0fb28bacee7d5b1e754621">
assembler/src/common/modules/chromosome_remover.cpp
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<li class="file-stats">
<a href="#255e6ad005637d916a1541799b28e9b6fe395804">
assembler/src/common/modules/path_extend/paired_library.hpp
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<li class="file-stats">
<a href="#ccf7fae9d487cbcbcddfddc5720aaf9b9b12188f">
assembler/src/common/modules/path_extend/pipeline/extenders_logic.cpp
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<li class="file-stats">
<a href="#50ddeca191e3442cb68a64f32bd07d948af813aa">
assembler/src/common/modules/path_extend/pipeline/launcher.cpp
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<li class="file-stats">
<a href="#c5efa3f8b532b137f7d7064603513eab36fc093e">
assembler/src/common/paired_info/pair_info_filters.hpp
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<li class="file-stats">
<a href="#77dde7ebdb55ad72e16835cc1fd919f3ef6e67f1">
assembler/src/common/pipeline/config_struct.cpp
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<li class="file-stats">
<a href="#f77b2c2c65849fe602bb4325ba6facfa0947eb05">
assembler/src/common/pipeline/config_struct.hpp
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<h5>The diff was not included because it is too large.</h5>
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