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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/cc3d39676a97b5d877408505bb394dcb00f0a1e7">cc3d3967</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-01T06:46:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/2b5403e921a43f0aed8abf1554e11210dd6d58da">2b5403e9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-01T06:46:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.11</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/cdbe066c91d8b6ff47a5a74092b8f4d05f20bb03">cdbe066c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-01T06:46:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/c31eeaad7bd0d33bdab7912ef849cafd81f98982">c31eeaad</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-01T06:46:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.0.11'
Update to upstream version '2.0.11'
with Debian dir 7d6effe396bd9ec2a67014ddfa00e9a3c5575e8e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/3d885b951476aab8531891d77fc952393175248f">3d885b95</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-01T06:46:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
</a>
</li>
<li class="file-stats">
<a href="#f1fae2471d3aa9a609a9966be5b7ab4c0f58fa75">
src/align/align.h
</a>
</li>
<li class="file-stats">
<a href="#8310f6d8c536d182ebd128c5e462f7c6addcbf6d">
src/align/culling.cpp
</a>
</li>
<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
</a>
</li>
<li class="file-stats">
<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
</a>
</li>
<li class="file-stats">
<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">
src/align/gapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
</a>
</li>
<li class="file-stats">
<a href="#1885ffadb5308ef489a619e821b06986ef227e22">
src/align/global_ranking/extend.cpp
</a>
</li>
<li class="file-stats">
<a href="#1b90f5ee8b6ca86e42623b99dcbd74ad0880c831">
src/align/global_ranking/global_ranking.cpp
</a>
</li>
<li class="file-stats">
<a href="#355a81a80ba3265c142881855d11cb783cf1858e">
src/align/global_ranking/global_ranking.h
</a>
</li>
<li class="file-stats">
<a href="#bf2f09cbd84aa17f89d5db00e4ef7fde6b953c36">
<span class="new-file">
+
src/align/global_ranking/table.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
</a>
</li>
<li class="file-stats">
<a href="#28524a0ac5e69e8f46d523d7d08fb7bec288edf3">
src/align/legacy/query_mapper.h
</a>
</li>
<li class="file-stats">
<a href="#0b08202a0e53b77834bad522a650ac3fd069ede6">
src/align/load_hits.cpp
→
src/align/load_hits.h
</a>
</li>
<li class="file-stats">
<a href="#0aeb9ee496bd03e6dc1842a40aab160bb18ef82d">
src/align/memory.cpp
</a>
</li>
<li class="file-stats">
<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">
src/align/output.cpp
</a>
</li>
<li class="file-stats">
<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">
src/align/target.h
</a>
</li>
<li class="file-stats">
<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">
src/align/ungapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
</a>
</li>
<li class="file-stats">
<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
</a>
</li>
<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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