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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/603e891c1d42dc5786ac80417178abab357b7c92">603e891c</a></strong>
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<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:35:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.5.2+ds1</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
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<li class="file-stats">
<a href="#4c22c6ce544539cbb7e7aca007be19275482889d">
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doc/logo.png
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<li class="file-stats">
<a href="#73ac3f1c0f36645568b29944d795f3fa05824147">
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doc/requirements.txt
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<li class="file-stats">
<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
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<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<li class="file-stats">
<a href="#645b8ce4142a3eb9619a83c91909df00bb43ac37">
doc/source/file_formats.rst
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<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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<li class="file-stats">
<a href="#cf755030c7e9dc2764320f7374a9fff54e0003fb">
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include/AlignmentCommon.hpp
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<li class="file-stats">
<a href="#af2b8b5096a067a33dd332bbfd1080ae3cf4763d">
include/AlignmentGroup.hpp
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<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
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<li class="file-stats">
<a href="#6a7f6f8853f86b38813cb42fd1e8bc1a007ae385">
include/AlignmentModel.hpp
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<li class="file-stats">
<a href="#335609a35be34ca99f8e15537a878ae3e11a6051">
include/FastxParserThreadUtils.hpp
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<li class="file-stats">
<a href="#f05db237f9b821f31941b5ede8a2c432d8736b61">
include/GZipWriter.hpp
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<li class="file-stats">
<a href="#0f80b0539693fb3b3cb030033c49f5a6d49d0af8">
<span class="new-file">
+
include/ONTAlignmentModel.hpp
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<li class="file-stats">
<a href="#40dc7bb6abfd8a1c59854ea50b764a2ca7e317a4">
include/ReadPair.hpp
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<li class="file-stats">
<a href="#b28e1098f756957ff90d12768200c4e9602817b4">
include/SalmonConfig.hpp
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<li class="file-stats">
<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b">
include/SalmonOpts.hpp
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<li class="file-stats">
<a href="#ce3a50cf35cf7f12a5dfa968fc323211ab21cf88">
include/Sampler.hpp
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<li class="file-stats">
<a href="#8ed491100d2189e665edcdee1d3d3c1bf51ac354">
include/SingleCellProtocols.hpp
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<li class="file-stats">
<a href="#97e1e60b1e2a6f10909728fcda203530154b719b">
include/Transcript.hpp
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<li class="file-stats">
<a href="#fdb5c95851c9c6af0ddc49abe4b54236371d2d62">
include/UnpairedRead.hpp
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<li class="file-stats">
<a href="#796915862dab567ad26fc5b39ce9a65cf3d544a3">
<span class="new-file">
+
include/backtrace.hpp
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<li class="file-stats">
<a href="#06313f9ee1f53a33829e5868a2d71ccb96958964">
include/concurrentqueue.h
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<li class="file-stats">
<a href="#ed5b323fc76589e9d58c007363dc77aab1e0fe6d">
include/cuckoohash_map.hh
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<li class="file-stats">
<a href="#a59a74137d8528c3d2633c0f3c137857732de1a6">
<span class="new-file">
+
include/dbg.hpp
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<li class="file-stats">
<a href="#d9225c32d4f01af48593b4d164c0276ef713fb37">
scripts/fetchPufferfish.sh
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</li>
<li class="file-stats">
<a href="#8fdbe631bc12d59b3cea9274359041cf09b11240">
src/Alevin.cpp
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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