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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/178860527d1e2e193b73b695aa219f73e2b4f00b">17886052</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:34:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/75af986f62f47443cb0804eb8fd25930d0bfdab8">75af986f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:35:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/603e891c1d42dc5786ac80417178abab357b7c92">603e891c</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:35:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.5.2+ds1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/e7747265091409eff9b7d42f6c40b24eb6db97b7">e7747265</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:35:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.5.2+ds1'
Update to upstream version '1.5.2+ds1'
with Debian dir ecbeac5e0483331d52902cb5925f623445d604ee</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/fcdc75cd9c57ff6071f5dd54d8404e3747543e74">fcdc75cd</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:35:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/d009c20a5b2d33d680ba03c60c4262228311b5e1">d009c20a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-09-03T15:58:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Missing Sphinx furo theme to overcome build error
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#4c22c6ce544539cbb7e7aca007be19275482889d">
<span class="new-file">
+
doc/logo.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#73ac3f1c0f36645568b29944d795f3fa05824147">
<span class="new-file">
+
doc/requirements.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
</a>
</li>
<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#645b8ce4142a3eb9619a83c91909df00bb43ac37">
doc/source/file_formats.rst
</a>
</li>
<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
</a>
</li>
<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
</a>
</li>
<li class="file-stats">
<a href="#cf755030c7e9dc2764320f7374a9fff54e0003fb">
<span class="new-file">
+
include/AlignmentCommon.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#af2b8b5096a067a33dd332bbfd1080ae3cf4763d">
include/AlignmentGroup.hpp
</a>
</li>
<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
</a>
</li>
<li class="file-stats">
<a href="#6a7f6f8853f86b38813cb42fd1e8bc1a007ae385">
include/AlignmentModel.hpp
</a>
</li>
<li class="file-stats">
<a href="#335609a35be34ca99f8e15537a878ae3e11a6051">
include/FastxParserThreadUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#f05db237f9b821f31941b5ede8a2c432d8736b61">
include/GZipWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#0f80b0539693fb3b3cb030033c49f5a6d49d0af8">
<span class="new-file">
+
include/ONTAlignmentModel.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#40dc7bb6abfd8a1c59854ea50b764a2ca7e317a4">
include/ReadPair.hpp
</a>
</li>
<li class="file-stats">
<a href="#b28e1098f756957ff90d12768200c4e9602817b4">
include/SalmonConfig.hpp
</a>
</li>
<li class="file-stats">
<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b">
include/SalmonOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#ce3a50cf35cf7f12a5dfa968fc323211ab21cf88">
include/Sampler.hpp
</a>
</li>
<li class="file-stats">
<a href="#8ed491100d2189e665edcdee1d3d3c1bf51ac354">
include/SingleCellProtocols.hpp
</a>
</li>
<li class="file-stats">
<a href="#97e1e60b1e2a6f10909728fcda203530154b719b">
include/Transcript.hpp
</a>
</li>
<li class="file-stats">
<a href="#fdb5c95851c9c6af0ddc49abe4b54236371d2d62">
include/UnpairedRead.hpp
</a>
</li>
<li class="file-stats">
<a href="#796915862dab567ad26fc5b39ce9a65cf3d544a3">
<span class="new-file">
+
include/backtrace.hpp
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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