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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/rsem">Debian Med / rsem</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/6b1a65b4de95b0b4c27ecc6eca57950451f13d90">6b1a65b4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:00:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Normalize watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/79986fbb06dc7dc488265f3d52ad22ccac5f641a">79986fbb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/6b451faf10b049ece9b913956e0f060efb44e206">6b451faf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/0ad4c7789cd7b76c1840e8c375bddd72c959b90b">0ad4c778</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/b7627f5aec630cfd15122d4ac9e19868dd3f7c88">b7627f5a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/edcbb8dfb4ba66221df424ab5b0045233ae07029">edcbb8df</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/2b999eb0a95381e5113f01f23cbfb5473788e1c5">2b999eb0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:01:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rsem/-/commit/dc9d59391e588a3f41a29c5e02cfc45d9dab9163">dc9d5939</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-09T08:04:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/rsem/-/compare/2108f089e3895cd671fb08a25a01aee86ad47cea...dc9d59391e588a3f41a29c5e02cfc45d9dab9163#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">rsem (1.3.3+dfsg-<span class="idiff left right">1.1) UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">rsem (1.3.3+dfsg-<span class="idiff left right">2) unstable</span>; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> <span class="idiff left right">* Non-maintainer upload.</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> <span class="idiff left right">[ Steffen Moeller ]</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Thu, 02 Sep 2021 13:20:54 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 09 Sep 2021 08:01:13 +0200</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">rsem (1.3.3+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/rsem/-/compare/2108f089e3895cd671fb08a25a01aee86ad47cea...dc9d59391e588a3f41a29c5e02cfc45d9dab9163#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Uploaders: Michael R. Crusoe <crusoe@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libncurses5-dev,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libboost-dev,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,10 +16,11 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"># bowtie is a run-time dependency available on only a few systems, not actually</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"># needed for building but it prevents the creation of uninstallable packages</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> bowtie | bowtie2</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6</span>.0</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/rsem</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/rsem.git</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Homepage: http://deweylab.github.io/RSEM/</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Homepage: https://deweylab.github.io/RSEM/</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Package: rsem</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/rsem/-/compare/2108f089e3895cd671fb08a25a01aee86ad47cea...dc9d59391e588a3f41a29c5e02cfc45d9dab9163#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/rsem/-/compare/2108f089e3895cd671fb08a25a01aee86ad47cea...dc9d59391e588a3f41a29c5e02cfc45d9dab9163#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/bli25wisc/rsem/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/bli25wisc/rsem/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Author: Li, Bo and Dewey, Colin</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Title: ></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,3 +23,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> Entry: SCR_013027</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Entry: rsem</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Repository: https://github.com/bli25wisc/rsem.git</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Repository-Browse: https://github.com/bli25wisc/rsem</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/rsem/-/compare/2108f089e3895cd671fb08a25a01aee86ad47cea...dc9d59391e588a3f41a29c5e02cfc45d9dab9163#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> https://github.com/bli25wisc/rsem/<span class="idiff left right">releases .*/v</span>(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/bli25wisc/rsem/<span class="idiff left right">tags (?:.*?/)?v?</span>(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span></pre>
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