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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/db5948df77a270f22a2fccb2e270659069217c47">db5948df</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T12:38:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/f5b8dc1b93ee97aae02b2ccd6b5d2cd5d7cccef5">f5b8dc1b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T12:38:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.803+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/c8d02e7ef463bbde1493332015372eee9ad9bb50">c8d02e7e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T12:38:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.0.803+dfsg'
Update to upstream version '2.0.803+dfsg'
with Debian dir a4167160f6b83d7233aa7e976237cce2ddf94130</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/e238804d768b58546310ef8cc7c3811ba69597a3">e238804d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T13:13:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">delete fix-ftbfs-on-i386.patch; applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/fcefa69633119592cff8344d13534a385e79610a">fcefa696</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T13:15:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: Standard-Version: 4.6.0.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/39d55c0cbdfc603d9aee3df58831c7a19f0aa330">39d55c0c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T13:16:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: shuffle Multi-Arch:same
Gbp-Dch: ignore
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/603cd00beaba35ac8f0cdc6d765a7cdec87a6bd8">603cd00b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T13:18:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a">f084ae20</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-12T19:19:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#2878ba706221d48e289eb37ee5404ae782c7ce97">
<span class="deleted-file">
−
debian/patches/fix-ftbfs-on-i386.patch
</span>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="deleted-file">
−
debian/patches/series
</span>
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<li class="file-stats">
<a href="#f04b610c5b8f84b471e110caffc7e63de2c0a089">
src/test/testsort.cpp
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libmaus2 (2.0.803-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Reduce size of test in testsort as it does not compile on x86</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Mon, 06 Sep 2021 10:16:41 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">libmaus2 (2.0.802-1) unstable; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Fix compilation without libdeflate</span>
</pre>
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<li id="87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.80<span class="idiff left right">2</span>,[germant@miltenyibiotec.de],[libmaus2],[https://gitlab.com/german.tischler/libmaus2])</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:80<span class="idiff left right">2</span>:0</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.80<span class="idiff left right">3</span>,[germant@miltenyibiotec.de],[libmaus2],[https://gitlab.com/german.tischler/libmaus2])</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:80<span class="idiff left right">3</span>:0</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">AC_MSG_NOTICE([Configuring for source in directory ${srcdir}])</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_CANONICAL_SYSTEM</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">AC_CANONICAL_HOST</span>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libmaus2 (2.0.803+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version 2.0.803+dfsg</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * delete fix-ftbfs-on-i386.patch; applied upstream</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * d/control: Standard-Version: 4.6.0.1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Étienne Mollier <emollier@debian.org> Sun, 12 Sep 2021 19:19:23 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">libmaus2 (2.0.802+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * add fix-ftbfs-on-i386.patch</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libsecrecy-dev,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> pkg-config,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.6.0</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.6.0<span class="idiff left right">.1</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libmaus2</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: https://gitlab.com/german.tischler/libmaus2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,6 +19,7 @@ Rules-Requires-Root: no</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Package: libmaus2-2</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Section: libs</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> ${misc:Depends},</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +27,6 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Suggests: secrecy</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Breaks: biobambam2 (<< 2.0.183~)</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Built-Using: ${libsecrecy:Built-Using}</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Description: collection of data structures and algorithms for biobambam</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> Libmaus2 is a collection of data structures and algorithms. It contains</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> .</span>
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<li id="2878ba706221d48e289eb37ee5404ae782c7ce97">
<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#2878ba706221d48e289eb37ee5404ae782c7ce97"><strong>debian/patches/fix-ftbfs-on-i386.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: fix ftbfs on i386</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Author: Étienne Mollier <emollier@debian.org></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: https://gitlab.com/german.tischler/libmaus2/-/issues/37</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2021-09-02</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libmaus2.orig/src/test/testsort.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libmaus2/src/test/testsort.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -1338,7 +1338,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- std::size_t const n = 1024*1024*1024;</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ std::size_t const n = 256*1024*1024;</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> std::size_t const threads = 24;</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> std::cerr << "filling array...";</span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">fix-ftbfs-on-i386.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/compare/54cad94c85a290a8b38f14956abbd610f7709a1f...f084ae20fc24b5bc60adeb5f7caea0d2ded8b70a#f04b610c5b8f84b471e110caffc7e63de2c0a089"><strong>src/test/testsort.cpp</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1338,7 +1338,7 @@ int main()</td>
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<pre style="margin: 0;"> <span id="LC1338" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC1339" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1340" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1341" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1024</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">1024</span><span class="o" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="mi" style="color: #099;"><span class="idiff right">1024</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1341" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1024</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">1024</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC1342" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">threads</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">24</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC1343" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1344" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"filling array..."</span><span class="p">;</span></span>
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