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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie">Debian Med / bowtie</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/da442a8fc098c125af6c9ec3a0d2a61c69895d6d">da442a8f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:47:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/6ca9ee4fa70e8cda5bdb9e11532a4bd0f0bfa61e">6ca9ee4f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/f1445fa79fcadc47579571e81078e2231990074c">f1445fa7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/dd0be1cbb73bde2d8fc73d4be1b359cfa6af0151">dd0be1cb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.3.1+dfsg'
Update to upstream version '1.3.1+dfsg'
with Debian dir 7cd83390d5ecb155b8ff04e1dc8d9412f658be08</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/aa3500b39d8fd857eedd2cc04d803a376d1cc112">aa3500b3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/55064dbb9363293c9981be699abcff3d9ec97b07">55064dbb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update renamed lintian tag names in lintian overrides.
Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/0951a14ca685bd42490499e0964ccba2118f4ee5">0951a14c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:48:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Apply multi-arch hints.
+ bowtie-examples: Add Multi-Arch: foreign.
Changes-By: apply-multiarch-hints
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/e6c4f704de4a1155b425d840f76a40da731625c7">e6c4f704</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:53:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No need to exclude files from upstream tarball any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/9bf017434a90cf99f756c6ce9e222a7ed0c86a44">9bf01743</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:53:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/e6d20acee25fcaeb2024c36210c5f917c634999f">e6d20ace</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T06:54:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.3.1'
Update to upstream version '1.3.1'
with Debian dir c15b94dde73abffb9fe3f4722fe3f6d17f276237</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/9591bd072d200e2e954a6100c07b855940bd224e">9591bd07</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T07:01:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/-/commit/9292e6dea5dbde1fda5f427bfe9dbc5a642a10bf">9292e6de</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-14T07:06:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#cf83fa67117337dc6c425f166a2d9415dd59047a">
<span class="new-file">
+
.github/workflows/random_tests.yml
</span>
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<li class="file-stats">
<a href="#b62e40e78d290dda60201f0671b337deb7fc7491">
<span class="new-file">
+
.github/workflows/simple_tests.yml
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</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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</li>
<li class="file-stats">
<a href="#dfe5e559b6d490c25075d3912c6d2202202c6f72">
bowtie-inspect
</a>
</li>
<li class="file-stats">
<a href="#26bd7718783ad8eb99119709aba9650e1414efdb">
bt2_locks.cpp
</a>
</li>
<li class="file-stats">
<a href="#ad2755e711011bd362f96ff15c058770229abd85">
bt2_locks.h
</a>
</li>
<li class="file-stats">
<a href="#2dc59495db241a3c26011728805727c9fedf0a8e">
debian/bowtie.lintian-overrides
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#c330a378502b29a6e4fbc543a55e6bb33f3a589b">
debian/patches/popcnt_capability.patch
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<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
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<li class="file-stats">
<a href="#0a860cdba9fc7bcf6b28c442b89b1e1f2c4add92">
debian/patches/simple-test
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<li class="file-stats">
<a href="#7a4c6ca7fd1e43d500615909e6b6935898977587">
debian/patches/use-dpkg-buildflags.patch
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
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<li class="file-stats">
<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
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<li class="file-stats">
<a href="#59bf596910fb7006481a4d8a45de81ff2bd75a4d">
doc/website/rhsidebar.ssi
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<li class="file-stats">
<a href="#bdf1fda883543f04c4a046fdcaa8ba0db73fdb37">
ebwt.h
</a>
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<li class="file-stats">
<a href="#69652f4e3eff95542ec1637fffb5d028d18a5a54">
ebwt_search_util.h
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<li class="file-stats">
<a href="#9a66ef5c5fbb28475032abcc5eae532d03bd29f3">
<span class="new-file">
+
genomes/.cvsignore
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</li>
<li class="file-stats">
<a href="#f06297a2ada54367ed9d9c768f848c4726441af2">
hit.h
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<li class="file-stats">
<a href="#88d2b0f7968c3acf1acde0c4814002d780087895">
<span class="new-file">
+
mem_ids.h
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</li>
<li class="file-stats">
<a href="#d29fd14304274912c3f57246f6c1ac7e34eab154">
multikey_qsort.h
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<li class="file-stats">
<a href="#cc60758ea89135534b00a4c0ae3e29ee95c0ef25">
scripts/bowtie-hbb.sh
</a>
</li>
<li class="file-stats">
<a href="#1ba32b1a76b5b57a56e4d834114b45c9fbeb218e">
shmem.h
</a>
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<li class="file-stats">
<a href="#660ce3632dfae6bcb8dd9430bc227c1af48265ec">
threading.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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