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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/sga">Debian Med / sga</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/b15520f4a2c3a2c4397f67b9a16a55c66a9ecca3">b15520f4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix my email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/b94b60ed0762ff489b98656e33da41109fbd9b98">b94b60ed</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/d8f40faeb7cbb3df282db1e88638b35d45a8f9a8">d8f40fae</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/72535b8d8c81e88181131939cde1dc73455bf25d">72535b8d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/e316eb0debfcdcfcc951b3ec340d7e08bf3f2894">e316eb0d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/94271349a4806f73a70472aecddd3dd1ea89b7b7">94271349</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:56:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/821d4412d26aa170161375f1ddbc159aa3c71295">821d4412</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T16:04:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Include perl:Depends
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sga/-/commit/9f1f32508d0ea43ffadb06af78243ac432bca803">9f1f3250</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T16:04:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
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</a>
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sga/-/compare/da608d4530126657b28595c0afdaa2cb567da3b1...9f1f32508d0ea43ffadb06af78243ac432bca803#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">sga (0.10.15-7) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Include ${perl:Depends}</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Fri, 17 Sep 2021 15:56:21 +0200</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">sga (0.10.15-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Team Upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/sga/-/compare/da608d4530126657b28595c0afdaa2cb567da3b1...9f1f32508d0ea43ffadb06af78243ac432bca803#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: sga</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Uploaders: Michael R. Crusoe <<span class="idiff left right">michael.crusoe@gmail.com</span>>,</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Michael R. Crusoe <<span class="idiff left right">crusoe@debian.org</span>>,</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libsparsehash-dev,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> zlib1g-dev | libz-dev,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,20 +16,22 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> python3 <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-ruffus <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> python3-pysam <!nocheck></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6.0</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/sga</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/sga.git</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Homepage: https://github.com/jts/sga</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Package: sga</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> samtools,</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> python3-ruffus,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> python3-pysam</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext">Recommends: abyss<span class="idiff left right"> (>= 2.0.2-1)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">Recommends: abyss</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Description: de novo genome assembler that uses string graphs</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> The major goal of SGA is to be very memory efficient, which is achieved by</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> using a compressed representation of DNA sequence reads.</span>
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<a href="https://salsa.debian.org/med-team/sga/-/compare/da608d4530126657b28595c0afdaa2cb567da3b1...9f1f32508d0ea43ffadb06af78243ac432bca803#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/sga/-/compare/da608d4530126657b28595c0afdaa2cb567da3b1...9f1f32508d0ea43ffadb06af78243ac432bca803#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">https://github.com/jts/sga/tags <span class="idiff left">.*/archive/v</span>(\d[\d<span class="idiff">\</span>.]<span class="idiff right">+</span>)\.tar\.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">https://github.com/jts/sga/tags <span class="idiff left">(?:.*?/)?v?</span>(\d[\d.]<span class="idiff right">*</span>)\.tar\.gz</span></pre>
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