<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/c606f873d40353f98f3daf26b6f1584a35847118">c606f873</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:17:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/a769207c680ae01e91c38a7f0a2ec4909d6f31e5">a769207c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:17:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/0061bf7110312fc6bac409476de4ebd656202e27">0061bf71</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:17:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.2+dfsg'
Update to upstream version '2.5.2+dfsg'
with Debian dir 085b6d0ae519b8000e32cc669d445421b031b7c9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/55ba350ed34f8209cbd2202bbe330bc2d5cf2d9c">55ba350e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:17:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/0f3decc552519fc3b225184892ee2936957c9cda">0f3decc5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:18:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version fixes FTBFS with gcc-11. Closes: #983981
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/4ad3d858659ad61418f77704efd584cd581f98c8">4ad3d858</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:33:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/3ca9f1b467a0203667cddd8bb0bb21a90f3ea8b3">3ca9f1b4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:33:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">correct my email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/aca8e44548feb580ff00db8d3dd37c7e27d8969e">aca8e445</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T15:39:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">unnecessary older-than versioned dependency: libbamtools-dev (<< 2.4.0+dfsg-6)
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#fe77d5d1439f26e353a42bbd38dece2467ff6558">
<span class="new-file">
+
.github/workflows/build.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#4daed3872c9f6123bd8e7b817c4a9cb81951d5dc">
debian/patches/0001-ignore-thirdparty-and-fix-jsoncpp.patch
</a>
</li>
<li class="file-stats">
<a href="#58f16871210739e0f9d186a07c84a8e1d4607fa4">
<span class="deleted-file">
−
debian/patches/0003-remove-custom-ExportHeader-function-use-install-inst.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4f4f2679699567fb83c1fd82901518a9128a09b7">
<span class="deleted-file">
−
debian/patches/0006-Doxygen-reproducibility
</span>
</a>
</li>
<li class="file-stats">
<a href="#acf76687b8d6bd6257223b8ed1843a41a9b7e11f">
<span class="deleted-file">
−
debian/patches/0008_Cmake_Test.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#adec3c96733d033b06cd3e8b577dc3ccca488225">
<span class="deleted-file">
−
debian/patches/doxygen-tweak
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="deleted-file">
−
debian/patches/spelling
</span>
</a>
</li>
<li class="file-stats">
<a href="#43c27734bcfab1fa28c84273d8d9e5501cedacb0">
<span class="deleted-file">
−
debian/patches/tiddit.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bccb95457e86072a42cfc7510adec5a8351566e1">
docs/Doxyfile
</a>
</li>
<li class="file-stats">
<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
src/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9796668945ce4458c931cfc12a2f2ef494201e75">
<span class="deleted-file">
−
src/ExportHeader.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#7b9395a6562d65b5c238c3cc981cb59c11dec559">
src/api/BamAlignment.cpp
</a>
</li>
<li class="file-stats">
<a href="#88e1ca0baac576ab1b9c2f9a0601b82106b183c8">
src/api/BamAlignment.h
</a>
</li>
<li class="file-stats">
<a href="#d386dc86c53f97c5ce5e39acc98ad3028683bf2f">
src/api/BamAux.h
</a>
</li>
<li class="file-stats">
<a href="#da1d0ef7a238a2d20709355e1658bd121b63b03e">
src/api/BamConstants.h
</a>
</li>
<li class="file-stats">
<a href="#7c2df3bf0b070bc025803e1fbd671bd43c29eaec">
src/api/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#642abb6c978c74f7c09f17d6aa85a59e6e417909">
src/api/SamHeader.cpp
</a>
</li>
<li class="file-stats">
<a href="#ad3405b12d53edd856242212485fc823bce43979">
src/api/SamHeader.h
</a>
</li>
<li class="file-stats">
<a href="#901ed4046d2eb44dd10453ca6e13f8eafc293b67">
src/api/SamProgram.cpp
</a>
</li>
<li class="file-stats">
<a href="#ec0961b124b67970091de01152dab30b3ee07da8">
src/api/SamProgram.h
</a>
</li>
<li class="file-stats">
<a href="#1d11e6cb507dbb0db085f8c0c16814cab22a29fb">
src/api/SamProgramChain.cpp
</a>
</li>
<li class="file-stats">
<a href="#867d5fa8dc5ba47ffdd0ab42e1a018c4f4e334d8">
src/api/SamProgramChain.h
</a>
</li>
<li class="file-stats">
<a href="#4d03b982c7bef44b2f696fc24bde4e269e727232">
src/api/SamReadGroup.cpp
</a>
</li>
<li class="file-stats">
<a href="#fd7da38fc73ee0024bf49f600178f96a85f140a7">
src/api/SamReadGroup.h
</a>
</li>
<li class="file-stats">
<a href="#2631ba9d212e0c04fe08899a5deb2ba81dbc7e52">
src/api/SamReadGroupDictionary.cpp
</a>
</li>
<li class="file-stats">
<a href="#71e5670996cd0c432ae5e96c482b6289e77bab67">
src/api/SamReadGroupDictionary.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/54022a84bdccaa816c36541f01ba1196609b92a5...aca8e44548feb580ff00db8d3dd37c7e27d8969e">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>