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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/3cc5008fe0ada1b6b0ea8c9578ba7f658b5fd104">3cc5008f</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T16:39:41+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix shared + static library building
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<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/f368869f1f7f8ee34635fdcf6e4c3c005e33379c">f368869f</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-09-17T16:43:49+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>4 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#295815bc81b7664bf5f47a7f64db6af47ad53941">
debian/patches/shared_and_static.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/aca8e44548feb580ff00db8d3dd37c7e27d8969e...f368869f1f7f8ee34635fdcf6e4c3c005e33379c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">bamtools (2.5.2+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bamtools (2.5.2+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version, fixes FTBFS with gcc-11. Closes: #983981</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> * refresh patches</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * refresh patches<span class="idiff left right"> including reworking the shared & static library patch</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Fri, 17 Sep 2021 1<span class="idiff left right">5:17:35</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Fri, 17 Sep 2021 1<span class="idiff left right">6:43:49</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">bamtools (2.5.1+dfsg-9) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/aca8e44548feb580ff00db8d3dd37c7e27d8969e...f368869f1f7f8ee34635fdcf6e4c3c005e33379c#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,11 +56,12 @@ Package: libbamtools-dev</td>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext">Depends: libbamtools2.5.1 (= ${binary:Version}),</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">Depends: libbamtools2.5.2 (= ${binary:Version}),</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> ${devlibs:Depends}</span>
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61
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">Suggests: libbamtools-doc (= ${binary:Version})</span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext">Breaks: libbamtools2.<span class="idiff left right">4.0 (<< 2.5.1+dfsg-2~)</span></span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext">Replaces: libbamtools2.<span class="idiff left right">4.0 (<< 2.5.1+dfsg-2~)</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">Breaks: libbamtools2.<span class="idiff left right">5.1</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">Replaces: libbamtools2.<span class="idiff left right">5.1</span></span>
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64
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext">Description: C++ API for manipulating BAM (genome alignment) files</span>
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65
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66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> BamTools facilitates research analysis and data management using BAM</span>
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66
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> files. It copes with the enormous amount of data produced by current</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -73,7 +74,7 @@ Description: C++ API for manipulating BAM (genome alignment) files</td>
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73
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> .</span>
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74
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> This is the developers API package.</span>
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75
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"></span>
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76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext">Package: libbamtools2.5.<span class="idiff left right">1</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">Package: libbamtools2.5.<span class="idiff left right">2</span></span>
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77
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext">Architecture: any</span>
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78
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext">Multi-Arch: same</span>
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79
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext">Section: libs</span>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/aca8e44548feb580ff00db8d3dd37c7e27d8969e...f368869f1f7f8ee34635fdcf6e4c3c005e33379c#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">0001-ignore-thirdparty-and-fix-jsoncpp.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">shared_and_static.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/aca8e44548feb580ff00db8d3dd37c7e27d8969e...f368869f1f7f8ee34635fdcf6e4c3c005e33379c#295815bc81b7664bf5f47a7f64db6af47ad53941"><strong>debian/patches/shared_and_static.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,31 +2,116 @@ Description: Build additional static lib</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Wed, 27 May 2020 09:59:29 +0200</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">--- a/src/api/CMakeLists.txt</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/api/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="p">@@ -38,18 +38,24 @@</span> if( WIN32 )</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> endif()</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- bamtools.orig/src/CMakeLists.txt</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ bamtools/src/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -33,7 +33,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> # create main BamTools API library</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_library( BamTools ${BamToolsAPISources} )</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_library( BamTools SHARED ${BamToolsAPISources} )</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_library( BamTools_static STATIC ${BamToolsAPISources} )</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> add_library(</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- BamTools</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools SHARED</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> api/BamAlignment.cpp</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> api/BamMultiReader.cpp</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -73,6 +73,48 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> api/internal/sam/SamHeaderValidator_p.cpp</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> api/internal/utils/BamException_p.cpp</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> )</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_library(</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools_static STATIC</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/BamAlignment.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/BamMultiReader.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/BamReader.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/BamWriter.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamHeader.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamProgram.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamProgramChain.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamReadGroup.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamReadGroupDictionary.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamSequence.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/SamSequenceDictionary.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/bam/BamHeader_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/bam/BamMultiReader_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/bam/BamRandomAccessController_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/bam/BamReader_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/bam/BamWriter_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/index/BamIndexFactory_p.cpp</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/index/BamStandardIndex_p.cpp</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/index/BamToolsIndex_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BamDeviceFactory_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BamFile_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BamFtp_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BamHttp_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BamPipe_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/BgzfStream_p.cpp</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/ByteArray_p.cpp</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/HostAddress_p.cpp</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/HostInfo_p.cpp</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/HttpHeader_p.cpp</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/ILocalIODevice_p.cpp</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/RollingBuffer_p.cpp</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/TcpSocketEngine_p.cpp</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/TcpSocket_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/sam/SamFormatParser_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/sam/SamFormatPrinter_p.cpp</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/sam/SamHeaderValidator_p.cpp</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/utils/BamException_p.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+)</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> </span>
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14
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="diff"> # The SONAME is bumped on every version increment</span>
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15
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64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="diff"> # as Bamtools does not yet guarantee a stable ABI</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> set_target_properties( BamTools PROPERTIES</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> SOVERSION "${BamTools_VERSION}"</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> OUTPUT_NAME "bamtools" )</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_target_properties( BamTools_static PROPERTIES</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ OUTPUT_NAME "bamtools" )</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> target_include_directories( BamTools PRIVATE "${ZLIB_INCLUDE_DIRS}" )</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> target_link_libraries( BamTools PRIVATE "${ZLIB_LIBRARIES}" "${WIN32_LIBRARIES}" )</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> install( TARGETS BamTools</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" )</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install( TARGETS BamTools_static</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" )</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="p">@@ -83,6 +125,12 @@</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> CXX_STANDARD 11</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> CXX_STANDARD_REQUIRED ON</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> CXX_EXTENSIONS OFF)</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_target_properties(</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools_static PROPERTIES</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ OUTPUT_NAME bamtools</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ CXX_STANDARD 11</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ CXX_STANDARD_REQUIRED ON</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ CXX_EXTENSIONS OFF)</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> target_include_directories(</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> BamTools PRIVATE</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> ${ZLIB_INCLUDE_DIRS}</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="p">@@ -91,6 +139,15 @@</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"> target_link_libraries(</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"> BamTools PRIVATE</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"> ${ZLIB_LIBRARIES})</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_include_directories(</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools_static PRIVATE</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ${ZLIB_INCLUDE_DIRS}</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ${CMAKE_CURRENT_SOURCE_DIR}</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ${CMAKE_CURRENT_BINARY_DIR})</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries(</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools_static PRIVATE</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ${ZLIB_LIBRARIES})</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> </span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"> if(WIN32)</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"> target_link_libraries(</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"><span class="p">@@ -103,6 +160,9 @@</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"> target_sources(</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"> BamTools PRIVATE</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"> api/internal/io/TcpSocketEngine_unix_p.cpp)</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ target_sources(</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ BamTools_static PRIVATE</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ api/internal/io/TcpSocketEngine_unix_p.cpp)</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"> endif()</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"> </span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"> if(EnableNodeJS)</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"><span class="p">@@ -195,6 +255,13 @@</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"> RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})</span>
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30
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"> install( FILES api_global.h DESTINATION "include/bamtools/api" COMPONENT Development )</span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> install( FILES BamAlgorithms.h DESTINATION "include/bamtools/api" COMPONENT Development )</span></pre>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"> install(</span>
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<td class="new_line diff-line-num new" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ TARGETS BamTools_static</span></span>
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<td class="new_line diff-line-num new" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}</span></span>
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<td class="new_line diff-line-num new" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}</span></span>
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<td class="new_line diff-line-num new" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="new_line diff-line-num new" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install(</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> TARGETS bamtools_cmd</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"> LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}</span></pre>
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