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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/altree">Debian Med / altree</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/b236af6d45e1c8d48284b64f2a4152e2ebe3477e">b236af6d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-17T12:20:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Replace dummy package libopenblas-base by libopenblas0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/d7116ed0c02e829e7ef03f3647739fa9484a771c">d7116ed0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-17T12:27:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/192bdfaba7e5e9641e86fdcfbb83ca9caad31fd2">192bdfab</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-17T12:28:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/4364b4eae20e084a43069d63d0bddb9cee75ecb9">4364b4ea</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-09-17T12:28:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/84b1fdebaaa0e4bdde227a21675ed5146d986627">84b1fdeb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-17T12:28:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Apply multi-arch hints.
+ altree-examples: Add Multi-Arch: foreign.
Changes-By: apply-multiarch-hints
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/altree/-/commit/194cbf9e650a3915d7b372b2fae9a6373f305b8c">194cbf9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-17T14:12:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not fail in clean target if latex-make is not installed on local machine
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/altree/-/compare/21055a5a26884f386e90d116caf83ebc13946115...194cbf9e650a3915d7b372b2fae9a6373f305b8c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">altree (1.3.1-11) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Replace dummy package libopenblas-base by libopenblas0</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #994474</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Fix watch file</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Set upstream metadata fields: Repository, Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Apply multi-arch hints.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> + altree-examples: Add Multi-Arch: foreign.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Do not fail in clean target if latex-make is not installed on local</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> machine</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 17 Sep 2021 12:18:39 +0200</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">altree (1.3.1-10) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Use figlatex instead of texgraphicx</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/altree/-/compare/21055a5a26884f386e90d116caf83ebc13946115...194cbf9e650a3915d7b372b2fae9a6373f305b8c#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +18,7 @@ Build-Depends: bash-completion,</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libblas-dev,</span>
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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> libtest-deep-perl,</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> fig2dev</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6</span>.0</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/altree</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/altree.git</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Homepage: https://gitlab.inria.fr/NGS/ALTree</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,7 +30,7 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> libmath-tamuanova-perl</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Recommends: libopenblas<span class="idiff left right">-base</span> | libatlas3-base | libmkl-rt | libblas.so.3</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Recommends: libopenblas<span class="idiff left right">0</span> | libatlas3-base | libmkl-rt | libblas.so.3</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Suggests: altree-examples</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Description: program to perform phylogeny-based association and localization analysis</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> ALTree was designed to perform association detection and localization of</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,6 +42,7 @@ Package: altree-examples</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Recommends: altree (= ${binary:Version})</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">Description: example files for ALTree</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> ALTree was designed to perform association detection and localization of</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> susceptibility sites using haplotype phylogenetic trees: first, it allows the</span>
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<a href="https://salsa.debian.org/med-team/altree/-/compare/21055a5a26884f386e90d116caf83ebc13946115...194cbf9e650a3915d7b372b2fae9a6373f305b8c#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="make"> dh <span class="nv" style="color: #008080;">$@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"><span class="nl">override_dh_auto_clean</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="make"> <span class="nv" style="color: #008080;">$(MAKE)</span> <span class="nt" style="color: #000080;">-C</span> Documentation distclean</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="make"> <span class="nv" style="color: #008080;">$(MAKE)</span> <span class="nt" style="color: #000080;">-C</span> Documentation distclean<span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">true</span></span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"> dh_auto_clean</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="make"><span class="nl">override_dh_auto_build</span><span class="o" style="font-weight: 600;">:</span></span>
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<a href="https://salsa.debian.org/med-team/altree/-/compare/21055a5a26884f386e90d116caf83ebc13946115...194cbf9e650a3915d7b372b2fae9a6373f305b8c#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,4 +19,5 @@ Registry:</td>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Entry: NA</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">- Name: OMICtools</span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> Entry: OMICS_13032</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Repository: https://gitlab.inria.fr/NGS/ALTree</span></pre>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Repository: https://gitlab.inria.fr/NGS/ALTree.git</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Repository-Browse: https://gitlab.inria.fr/NGS/ALTree</span></pre>
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<a href="https://salsa.debian.org/med-team/altree/-/compare/21055a5a26884f386e90d116caf83ebc13946115...194cbf9e650a3915d7b372b2fae9a6373f305b8c#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts=filenamemangle=s/.*\.tar\.gz\?ref=v?(\d\S*)/ALTree-$1\.tar\.gz/g \</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> https://gitlab.inria.fr/NGS/ALTree/tags .*/<span class="idiff left">repository/</span>v@ANY_VERSION@/<span class="idiff right">.*archive</span>\.tar\.gz</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://gitlab.inria.fr/NGS/ALTree/tags .*/v@ANY_VERSION@/<span class="idiff left right">ALTree-v@ANY_VERSION@</span>\.tar\.gz</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"># https://gitlab.inria.fr/NGS/ALTree/repository/v1.3.1/archive.tar.gz</span></pre>
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