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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ivar">Debian Med / ivar</a>
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<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/bf52d1c52095e60a96b8e2a0a88b56fad5c3d184">bf52d1c5</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-09-22T15:09:24+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add gcc-11_2.patch; fixes ftbfs with Gcc 11
</pre>
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<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/5e3caa488825527ab71fef9287cc3eb350ef83f6">5e3caa48</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-09-22T15:12:03+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#e169787e6c37d9cbbc2a41ef4bf4789798ef6c56">
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+
debian/patches/gcc-11_2.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ivar/-/compare/f2c38ea22ac7797e28d770ff0c161967c1581db4...5e3caa488825527ab71fef9287cc3eb350ef83f6#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ivar (1.3.1+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * add gcc-11_2.patch; fixes ftbfs with Gcc 11 (thanks for the patch</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> to Gianfranco Costamagna)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #984067</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Sep 2021 15:09:57 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">ivar (1.3.1+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * add forward-build-options.patch; build ivar with hardened build options</span>
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<li id="e169787e6c37d9cbbc2a41ef4bf4789798ef6c56">
<a href="https://salsa.debian.org/med-team/ivar/-/compare/f2c38ea22ac7797e28d770ff0c161967c1581db4...5e3caa488825527ab71fef9287cc3eb350ef83f6#e169787e6c37d9cbbc2a41ef4bf4789798ef6c56"><strong>debian/patches/gcc-11_2.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Fix another gcc-11 build failure due to uninitialized variable</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Gianfranco Costamagna <locutusofborg@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/984067</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded:</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Last-Update: 2021-09-22</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- ivar-1.3.1+dfsg.orig/tests/test_primer_trim_edge_cases.cpp</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ivar-1.3.1+dfsg/tests/test_primer_trim_edge_cases.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -29,7 +29,12 @@</span> int main(){</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> hts_itr_t *iter = NULL;</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> iter = sam_itr_querys(idx, header, region_.c_str());</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> bam1_t *aln = bam_init1();</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cigar_ t;</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ cigar_ t = {</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ NULL,</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ false,</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ 0,</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ 0</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ };</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> uint32_t *cigar;</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> int primer_ctr = 0;</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> int ctr = 0;</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"></span></pre>
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<a href="https://salsa.debian.org/med-team/ivar/-/compare/f2c38ea22ac7797e28d770ff0c161967c1581db4...5e3caa488825527ab71fef9287cc3eb350ef83f6#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Fix-warning.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">forward-build-options.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">gcc-11.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">gcc-11_2.patch</span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">privacy-breach.patch</span></pre>
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