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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/b04f37cb9da1f2be60c1d32449876361ee047ced">b04f37cb</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:02:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/f079cb51270c80a2c7129af1998c4e546a4c38e1">f079cb51</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:02:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 38.93+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/6b7111c5d0fef7d35c670784dfa10bf9a449649d">6b7111c5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:02:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/38.93+dfsg'
Update to upstream version '38.93+dfsg'
with Debian dir 09dfdef2efe57c18ae83c0b2ba63892441cd247a</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/81e789fd5ab2fd5d6c4deaeb223a21f95f9fb64b">81e789fd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:02:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/874fbeb942d9bf4f6fb0441b1a50f834c2da0d7e">874fbeb9</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:03:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: watch file standard 4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/f0c3cd5784b8b4c799218995d52ba501d366721a">f0c3cd57</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:57:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/m/bbduk.sh.1: fix groff-message
Leaving the file as is would otherwise be possibly causing
malformtions in the manual page.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/5054a58597388c732f51a256190216709901770e">5054a585</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T22:59:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: fix duplicate word in bbmap description
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/76ba9053a8305df78348cd22bb25f26fba772be5">76ba9053</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T23:05:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/m/bbmap.sh.1: fix typos in bbmap(1) manual
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/9d24a5918c40c1fdaf747d6e17ddbeac641ef1ae">9d24a591</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T23:06:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/m/bbnorm.sh.1: fix a typo in bbnorm(1) manual
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/9deaa6bb19e9dedcdc87b1af21f96086ca2f92a0">9deaa6bb</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-09-25T23:10:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#174bf373ba63cc448f958360fe7a83a4a4e92011">
current/align2/QualityTools.java
</a>
</li>
<li class="file-stats">
<a href="#71f0cbc97c5a6dcff4abac99b9d6e67422d8ada8">
current/assemble/KmerCompressor.java
</a>
</li>
<li class="file-stats">
<a href="#beb58a1ba4c4e20b84328d78ddbc5927ae238062">
current/assemble/Shaver1.java
</a>
</li>
<li class="file-stats">
<a href="#5b8e4cc34e5021e8eba5bbbd07fba52303fd55b2">
current/assemble/Tadpole1.java
</a>
</li>
<li class="file-stats">
<a href="#6d5c881576ef1d9ee79fa9d1106dc627c0efed8f">
current/bloom/BloomFilter.java
</a>
</li>
<li class="file-stats">
<a href="#c015df7daac0b9e817fee8f46fcba405ceaa6a59">
current/bloom/BloomFilterCorrector.java
</a>
</li>
<li class="file-stats">
<a href="#46af8af8ebf9b9ecfcce9243b76ed0583cf7155f">
current/bloom/BloomFilterCorrectorWrapper.java
</a>
</li>
<li class="file-stats">
<a href="#723a196a8b092981388ce8177b654844ee60867f">
current/bloom/KmerCount7MTA.java
</a>
</li>
<li class="file-stats">
<a href="#d89ce85c8239a13f62bc6749a5518b9eb09e762f">
current/cardinality/CardinalityTracker.java
</a>
</li>
<li class="file-stats">
<a href="#6bd1b3499670b319c02db770fef733233be80a79">
current/cardinality/LogLog_old.java
</a>
</li>
<li class="file-stats">
<a href="#a35908daa2540e2736e2bbf99e0e5e2ccb1f41fb">
current/clump/ClumpList.java
</a>
</li>
<li class="file-stats">
<a href="#434f7f15c0d4065128eb57ef77048c5486979f33">
current/clump/KmerComparator.java
</a>
</li>
<li class="file-stats">
<a href="#28aa36d4bdbad2c5d9349b940ec4a4f153afe4d8">
current/cluster/ClusterTools.java
</a>
</li>
<li class="file-stats">
<a href="#ca17409f80bd7e6ce5f2057d84a5994a19bd4ec1">
current/fileIO/ByteStreamWriter.java
</a>
</li>
<li class="file-stats">
<a href="#ef637b79f50f8c86ed30d6bb954abe22a55553ea">
current/jgi/AssemblyStats2.java
</a>
</li>
<li class="file-stats">
<a href="#06a7eaaf098b8d2e7c18a48b5d98671b027f6af9">
current/jgi/BBDuk.java
</a>
</li>
<li class="file-stats">
<a href="#8e80fc83372d80183d64fca45f7913aa3f58f416">
current/jgi/BBDuk2.java
</a>
</li>
<li class="file-stats">
<a href="#da2b033b67e7fa2a989e0c1a2bef13d8dae25e20">
current/jgi/BBMergeOverlapper.java
</a>
</li>
<li class="file-stats">
<a href="#a4135cfe683417cb408941bfec64646874a2b2d4">
current/jgi/Dedupe.java
</a>
</li>
<li class="file-stats">
<a href="#bd0942bfb9dd3b11e6e19d2106d40c87cea01679">
current/jgi/Dedupe2.java
</a>
</li>
<li class="file-stats">
<a href="#44af0c89e3d1df81c14e174de7ea80380c75ed6a">
current/jgi/KExpand.java
</a>
</li>
<li class="file-stats">
<a href="#d1691c5afe08e631c06202d08f5d2f086522fcfd">
current/jgi/KmerCountExact.java
</a>
</li>
<li class="file-stats">
<a href="#635fa9bb7034f5bd7a766f17d0d6cc9b0800f06f">
current/jgi/RQCFilter2.java
</a>
</li>
<li class="file-stats">
<a href="#c1eb3ba3e50eb26c73088b4da40ccd2361d064a3">
current/jgi/RQCFilterStats.java
</a>
</li>
<li class="file-stats">
<a href="#72639879232e374c9a04641dcb8f60ed95b0b3db">
current/jgi/Seal.java
</a>
</li>
<li class="file-stats">
<a href="#8a52910fddf0ae5f629ae35d6e85749fa9a04672">
<span class="new-file">
+
current/jgi/SealRefInfo.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#59940be4db371b8da4c8524f89fd60860a3e7208">
current/kmer/AbstractKmerTable.java
</a>
</li>
<li class="file-stats">
<a href="#9081b2de9821c84756012c77e05edc5fd55c7a11">
<span class="deleted-file">
−
current/kmer/AtomicShortArray.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#7a7801d3b686f4082840868c754057c0e39c60d5">
current/kmer/KmerTableSet.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #666;">
—
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<a href="https://salsa.debian.org/med-team/bbmap/-/compare/7a0b4b6a1b15d2a420fb784adbe8c452af7d0292...9deaa6bb19e9dedcdc87b1af21f96086ca2f92a0">View it on GitLab</a>.
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