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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/ssake">Debian Med / ssake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/75cdc375e77d7ae1a553d00bf4ee070492ec0b95">75cdc375</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.0.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="new-file">
+
LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#275d783e298228506068436512433d343feb52aa">
readme.md
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</li>
<li class="file-stats">
<a href="#b2999b2afc2eba53c38d3a185276a79e8bf9c869">
<span class="new-file">
+
ssake-logo.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#b65c7b722c46c4f6ad666d9c7a663c753f12d4a7">
SSAKE
→
ssake/SSAKE
</a>
</li>
<li class="file-stats">
<a href="#425d1a4b6616809f0b81ff7b0a9bac55e682b653">
<span class="new-file">
+
ssake/readme.md
</span>
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</li>
<li class="file-stats">
<a href="#3d3752e14727a17210e1729db3a85cbf817f2a80">
test/CelegansLinkedReadsAssembly.sh
→
ssake/test/CelegansLinkedReadsAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#8e771cd2944227ba7666bd600666728a0b540f3e">
test/Herpesvirus_3.60kb.reads.fa
→
ssake/test/Herpesvirus_3.60kb.reads.fa
</a>
</li>
<li class="file-stats">
<a href="#5a369404feba3fd1c1439cdf0bd007a33c23d014">
test/Herpesvirus_3.60kb.reference.fa
→
ssake/test/Herpesvirus_3.60kb.reference.fa
</a>
</li>
<li class="file-stats">
<a href="#0022ba8b1e3ad384237a57e1e4b1d335b75c2d43">
test/Herpesvirus_3.60kb.seed.fa
→
ssake/test/Herpesvirus_3.60kb.seed.fa
</a>
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<li class="file-stats">
<a href="#57f5624c90b9ca7e8a03836ce653ed7d4ab4797d">
test/HiSeqFusobacteriumAssembly.sh
→
ssake/test/HiSeqFusobacteriumAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#1cefa31356aa8a70a7ae2157086622d8b4d8c91e">
test/MiSeqCampylobacterAssembly.sh
→
ssake/test/MiSeqCampylobacterAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#ac18579c46089ff84f3fbca5feebf44061227a13">
test/MiSeqCampylobacterAssemblyPIPELINE.sh
→
ssake/test/MiSeqCampylobacterAssemblyPIPELINE.sh
</a>
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<li class="file-stats">
<a href="#117650e9942ef8fcd2b5deedd8eab83554f6ee03">
test/MiSeqEbolaAssemblyPIPELINE.sh
→
ssake/test/MiSeqEbolaAssemblyPIPELINE.sh
</a>
</li>
<li class="file-stats">
<a href="#d7aa4e54d2279f77844825963b609f261c4975eb">
test/MiSeqEcoliAssembly250XPE300.sh
→
ssake/test/MiSeqEcoliAssembly250XPE300.sh
</a>
</li>
<li class="file-stats">
<a href="#e19cdba5be7442c88976fb9f09686e6bb96b3ba6">
test/README.txt
→
ssake/test/README.txt
</a>
</li>
<li class="file-stats">
<a href="#7ba4700d73781d78c401ec64c9fb7cf28e2d1a21">
test/RUNME.sh
→
ssake/test/RUNME.sh
</a>
</li>
<li class="file-stats">
<a href="#e7e1482be000c5eff16ae7e4799c7939367225bd">
test/assembly_metrics_tests.txt
→
ssake/test/assembly_metrics_tests.txt
</a>
</li>
<li class="file-stats">
<a href="#421c24c3b5080f988e6f17da8ddb1aed1a0c7737">
test/coliMiSeq300m80.scaffolds.200stats
→
ssake/test/coliMiSeq300m80.scaffolds.200stats
</a>
</li>
<li class="file-stats">
<a href="#2487afeb723a1ce505950e0c8b8d04b91497d13d">
test/coliMiSeq300m80.scaffolds.500stats
→
ssake/test/coliMiSeq300m80.scaffolds.500stats
</a>
</li>
<li class="file-stats">
<a href="#7779f2ecfb67fd886da01649fa26f0be90350db5">
test/coliMiSeq300m80.time
→
ssake/test/coliMiSeq300m80.time
</a>
</li>
<li class="file-stats">
<a href="#b22ace5db47ea93464cc7b3d4ce64c68ecfe097d">
test/fusion-targets.fa
→
ssake/test/fusion-targets.fa
</a>
</li>
<li class="file-stats">
<a href="#3ac4bec6c742eb778ffc939211444dce222faa11">
test/runSSAKE.sh
→
ssake/test/runSSAKE.sh
</a>
</li>
<li class="file-stats">
<a href="#6a8f332d16675a56b94fce43365a43f73cb49650">
test/runSSAKEtargeted.sh
→
ssake/test/runSSAKEtargeted.sh
</a>
</li>
<li class="file-stats">
<a href="#aa18105c8569bb4519fa74ea5b17caf58eac27fc">
tools/TQS.py
→
ssake/tools/TQS.py
</a>
</li>
<li class="file-stats">
<a href="#19121ef4460c67db2e2dfa2556f8813266955956">
tools/TQS.readme
→
ssake/tools/TQS.readme
</a>
</li>
<li class="file-stats">
<a href="#93e2295fa8ee13665aa708c1c8e53d68023dc762">
tools/TQSexport.py
→
ssake/tools/TQSexport.py
</a>
</li>
<li class="file-stats">
<a href="#4ec43ba6cd95008f408a8d75e9c5850b0de6faa0">
tools/TQSfastq.pl
→
ssake/tools/TQSfastq.pl
</a>
</li>
<li class="file-stats">
<a href="#527b55de9a3abb392e970976daad40e05374607a">
tools/TQSfastq.py
→
ssake/tools/TQSfastq.py
</a>
</li>
<li class="file-stats">
<a href="#ffd4354ae246b1808cbdd6dd27a17dfcaa47f411">
tools/TRIMMING_PAIRED_READS.README
→
ssake/tools/TRIMMING_PAIRED_READS.README
</a>
</li>
<li class="file-stats">
<a href="#1ce63daadd0207754fd5caeceba9d08dd03d7487">
tools/analyzePositionSSAKE.pl
→
ssake/tools/analyzePositionSSAKE.pl
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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