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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ssake">Debian Med / ssake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/0abfe3c3e8430cc9f820976685f1d5ca158d39a0">0abfe3c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:40:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">upstream fixed tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/75cdc375e77d7ae1a553d00bf4ee070492ec0b95">75cdc375</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.0.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/8ad46fbe129cd845a253bf4fc1645d78e620df94">8ad46fbe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/fe9de0b30a2298dc732626a33447403355d63714">fe9de0b3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.0.1'
Update to upstream version '4.0.1'
with Debian dir c1166f5722c188da2422d47ba3e40ea6702ff79b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/2defd0520028cdfb33b6e91125fa91dff8cbb65f">2defd052</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/2f414d70b1001d16195bcc8b7f7e0890a4ba7944">2f414d70</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/467d995ebe113fd8776a7cd1459fada68f6cfcd0">467d995e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/434397aff38aaa32c5b8cb685caa2f6237b31a76">434397af</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/fe82415e2b37baf3fc087f4166f453720e4a6355">fe82415e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:41:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/dbbf040a6571d65ef177d0a885779671911dd1bc">dbbf040a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T13:52:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/951d0cd692bf00e937174b75515031cd63a41c2b">951d0cd6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T14:01:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt install targets to new path in upstream source
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ssake/-/commit/853f129133309236688d2c18a9653f7f7417da7e">853f1291</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-27T14:29:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="new-file">
+
LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#e855847457f4f2252dc3397d08433a3f763a33e4">
debian/patches/do_not_send_mail_after_testing.patch
</a>
</li>
<li class="file-stats">
<a href="#93b6380d5716c97079e78b7dec432a3fbc5226ff">
debian/patches/no_privacy_breach_logo.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#5aa4cd5006eb2bf892b7a8147ccf3087b0c72873">
debian/ssake-examples.install
</a>
</li>
<li class="file-stats">
<a href="#acfffae9c11632bcf8708093f29aa2c21cf0173a">
debian/ssake.docs
</a>
</li>
<li class="file-stats">
<a href="#89d9af63a84e50aed892046337809d7b86277040">
debian/ssake.install
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#275d783e298228506068436512433d343feb52aa">
readme.md
</a>
</li>
<li class="file-stats">
<a href="#b2999b2afc2eba53c38d3a185276a79e8bf9c869">
<span class="new-file">
+
ssake-logo.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#b65c7b722c46c4f6ad666d9c7a663c753f12d4a7">
SSAKE
→
ssake/SSAKE
</a>
</li>
<li class="file-stats">
<a href="#425d1a4b6616809f0b81ff7b0a9bac55e682b653">
<span class="new-file">
+
ssake/readme.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#3d3752e14727a17210e1729db3a85cbf817f2a80">
test/CelegansLinkedReadsAssembly.sh
→
ssake/test/CelegansLinkedReadsAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#8e771cd2944227ba7666bd600666728a0b540f3e">
test/Herpesvirus_3.60kb.reads.fa
→
ssake/test/Herpesvirus_3.60kb.reads.fa
</a>
</li>
<li class="file-stats">
<a href="#5a369404feba3fd1c1439cdf0bd007a33c23d014">
test/Herpesvirus_3.60kb.reference.fa
→
ssake/test/Herpesvirus_3.60kb.reference.fa
</a>
</li>
<li class="file-stats">
<a href="#0022ba8b1e3ad384237a57e1e4b1d335b75c2d43">
test/Herpesvirus_3.60kb.seed.fa
→
ssake/test/Herpesvirus_3.60kb.seed.fa
</a>
</li>
<li class="file-stats">
<a href="#57f5624c90b9ca7e8a03836ce653ed7d4ab4797d">
test/HiSeqFusobacteriumAssembly.sh
→
ssake/test/HiSeqFusobacteriumAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#1cefa31356aa8a70a7ae2157086622d8b4d8c91e">
test/MiSeqCampylobacterAssembly.sh
→
ssake/test/MiSeqCampylobacterAssembly.sh
</a>
</li>
<li class="file-stats">
<a href="#ac18579c46089ff84f3fbca5feebf44061227a13">
test/MiSeqCampylobacterAssemblyPIPELINE.sh
→
ssake/test/MiSeqCampylobacterAssemblyPIPELINE.sh
</a>
</li>
<li class="file-stats">
<a href="#117650e9942ef8fcd2b5deedd8eab83554f6ee03">
test/MiSeqEbolaAssemblyPIPELINE.sh
→
ssake/test/MiSeqEbolaAssemblyPIPELINE.sh
</a>
</li>
<li class="file-stats">
<a href="#d7aa4e54d2279f77844825963b609f261c4975eb">
test/MiSeqEcoliAssembly250XPE300.sh
→
ssake/test/MiSeqEcoliAssembly250XPE300.sh
</a>
</li>
<li class="file-stats">
<a href="#e19cdba5be7442c88976fb9f09686e6bb96b3ba6">
test/README.txt
→
ssake/test/README.txt
</a>
</li>
<li class="file-stats">
<a href="#7ba4700d73781d78c401ec64c9fb7cf28e2d1a21">
test/RUNME.sh
→
ssake/test/RUNME.sh
</a>
</li>
<li class="file-stats">
<a href="#e7e1482be000c5eff16ae7e4799c7939367225bd">
test/assembly_metrics_tests.txt
→
ssake/test/assembly_metrics_tests.txt
</a>
</li>
<li class="file-stats">
<a href="#421c24c3b5080f988e6f17da8ddb1aed1a0c7737">
test/coliMiSeq300m80.scaffolds.200stats
→
ssake/test/coliMiSeq300m80.scaffolds.200stats
</a>
</li>
<li class="file-stats">
<a href="#2487afeb723a1ce505950e0c8b8d04b91497d13d">
test/coliMiSeq300m80.scaffolds.500stats
→
ssake/test/coliMiSeq300m80.scaffolds.500stats
</a>
</li>
<li class="file-stats">
<a href="#7779f2ecfb67fd886da01649fa26f0be90350db5">
test/coliMiSeq300m80.time
→
ssake/test/coliMiSeq300m80.time
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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