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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/sepp">Debian Med / sepp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/3eb99db281976fd3f8d01b989427020bb16f768f">3eb99db2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-24T18:01:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.5.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/4d914a8d51d050a41a4d5cd89efe5e2912b67053">4d914a8d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-24T18:02:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.5.1+dfsg'
Update to upstream version '4.5.1+dfsg'
with Debian dir 2e0d3987acddd7904cf2c8dc956a7a3485071ebb</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/3a53504f4668699ae639d7bcc9a4bf41acf1f16b">3a53504f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-24T18:10:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using my debian.org email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/18481475d9b59a8fc200521e622011e6831659ea">18481475</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-25T21:39:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">tipp is now shipped in a different source package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/f951b94361db1998cb9c1f01c73ad49da0dff74a">f951b943</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-25T21:44:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches, deleting 3 upstreamed ones
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/a65f8456ac571080b6fd08b72bad8f60f8dd7aff">a65f8456</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-26T21:26:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting Standards version to 4.6.0 (no change)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/a661041e52215749351abf3809b17544c84133d0">a661041e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-26T21:30:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Syntax error corrected in d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/2a9d4b7eb31efbc8eb11b02490fb62551aa58c84">2a9d4b7e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-26T21:30:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using the Debian path of hmmbuild in the test testUPP
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/6d52a192f099063112c8d2387b34597f87122c18">6d52a192</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T15:22:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Solving the conflict with commit abacb57e
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/39f3c8160bdea94e8bb44f282e2be6ff8e38a63e">39f3c816</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T15:53:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Putting again dh_auto_configure in its own override
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/6a53c852e9013c3c396ac0c57bd2c698e51acd96">6a53c852</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T16:08:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing manpages of run-sepp.py and run_sepp.py
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/8a2491a35a8e05bf32860f98f53cc196d90508c4">8a2491a3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T16:15:06+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding d/sepp.maintscript to remove /etc/sepp/tipp/config, gone in tipp source package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/f7be547245304303481f410dee146629044b348a">f7be5472</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T16:17:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Dropping unneeded dependencies
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/2fa2962c7743ea4c5e4b1074991fd3d337b57872">2fa2962c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T17:28:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Providing a NEWS file to inform users that tipp now has its own package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/141f87ee53a14a19c7d376a03e81ea47377d2cc6">141f87ee</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-27T17:37:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
<span class="new-file">
+
.coveragerc
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#c42acb496cffcd06b599699e4ab23a959345a34f">
README.SEPP.md
</a>
</li>
<li class="file-stats">
<a href="#96eba0d32c6e009fd44d232fc6d9db4b379d1234">
<span class="deleted-file">
−
README.TIPP.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce6c81ff32edebf71116a3c16352eb4562def454">
README.UPP.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
debian/README.Debian
</a>
</li>
<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#97d1ef36b5d0b6d33012897bd58c4b0d9fbd4c3e">
debian/man/run-sepp.sh.1
</a>
</li>
<li class="file-stats">
<a href="#e705f9c0b5d0a2a928ec403c9867eb9f3c90ae9a">
<span class="deleted-file">
−
debian/man/run_abundance.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#3478ac7e366d3400eb723ca169ed100babf034f5">
debian/man/run_sepp.py.1
</a>
</li>
<li class="file-stats">
<a href="#3410c7cb3f54c55cbccdb8139f0e943f18023a2a">
<span class="deleted-file">
−
debian/man/run_tipp.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#081912cd59d7da5c7ef903dd7b2839c5fb721ad3">
<span class="deleted-file">
−
debian/man/run_tipp_tool.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#ca13c5da842c9c77dd19d666915c7a61726b1901">
<span class="deleted-file">
−
debian/man/tipp.config.5
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a5501661d0634356baa31697665b72b16f41f4d">
debian/patches/change_java_version_for_ant.patch
</a>
</li>
<li class="file-stats">
<a href="#46407b1326bdee026280065f20152516ad775d7c">
debian/patches/configuration_files_in_etc_and_per_user.patch
</a>
</li>
<li class="file-stats">
<a href="#361e7afb650e5e5c4935739edb181d25918197fd">
debian/patches/deactivating_log_test.patch
</a>
</li>
<li class="file-stats">
<a href="#c7ac154ea78b0726c974928302e250aedcc397d4">
<span class="new-file">
+
debian/patches/hmmbuild_path_for_testUPP.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#3376dba004c17b9d80d1885abdb0f45aee93c34c">
debian/patches/java_build.patch
</a>
</li>
<li class="file-stats">
<a href="#0a90390df815eb60dcb2ee83936b97e7ab71e530">
<span class="deleted-file">
−
debian/patches/json_collections.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c02e82f4372d47f05f0a2c5371df2f4a919348a4">
<span class="deleted-file">
−
debian/patches/looking_for_integer_in_placements.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bf486c3b8f177629f71b3843ce1800203445e6eb">
<span class="deleted-file">
−
debian/patches/make_split_sequences_script.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#baf09939cda3fe56aa57fe83e167d8594afc7d6b">
debian/patches/setup.patch
</a>
</li>
<li class="file-stats">
<a href="#0fb2ebdf1422ca07aa40555402a7793da21fdefa">
debian/patches/use_debian_packaged_guppy_from_pplacer.patch
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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