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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/lefse">Debian Med / lefse</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/1b6d11f20a2393d8e497b7d8ac991775d29c8c24">1b6d11f2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/8c92624d6a8ae9288122fcae15ba390270b644a7">8c92624d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/db06dc0c1ab5407caa7b87980789ee1f880fe3fe">db06dc0c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.2'
Update to upstream version '1.1.2'
with Debian dir 2434070301209a69affe4bef5ada994928a41388</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/3b56af0c1e7e76cb3c1de5bf737d673b52ce7517">3b56af0c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/65d5346a3fb6af7cdd31e091abd6dcea3a8e7a01">65d5346a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/f476f65af68fbca9a8130d8c42f0aa4255d91a06">f476f65a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/b79acc640e1cdefdad4494fa3df51c2c61f2b921">b79acc64</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/420e5518fb9b9abcbf64e6d17043c3827665b0e0">420e5518</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:33:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/fcca5661d7fc8a5975767fa7240a777aec86c61d">fcca5661</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T06:46:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/28f71fce27cbc09a617f4f5522593169df715c78">28f71fce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:04:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">buildsystem=pybuild
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/b367108874457a65c58c86ccd7a39abcb94b3f33">b3671088</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:07:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python3-setuptools
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/1727c91ae4a6910652910047952fa16eab270e4a">1727c91a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:20:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unneeded overrides
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/1fc85b61bfbb079f1e1aa4ace6aafcbc5c2b3038">1fc85b61</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:20:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove debian/get-orig-source
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/27e1921e0bdaed55fa8dada473185cfe738c4252">27e1921e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:21:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">lintian-overrides: script-with-language-extension
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/c3907cc06fd7918d22d4ac4eb2fa6bfebe9e16d5">c3907cc0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T07:28:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;"> * Fix script names in autopkgtest
* Inform users about changed names in debian/NEWS
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/6116650a997ca8f65bf3572b0c30f94914fba870">6116650a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T08:03:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move lefse_format_input.py test at bottom since it has issues with h5py which are probably caused by the hdf5 transition. Now we can see whether at least other tests are passing.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/6b11c819ca444d1d3bd663d353f95f791d3a8dc9">6b11c819</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T08:10:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rename and update manpages
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/14642014979349b80c811b792c44e42192de3109">14642014</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T08:19:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure .py extension is not stripped by dh_installman
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/dc5c98a09119c2b4f241c505a43daea403cd3755">dc5c98a0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T08:23:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix name in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lefse/-/commit/5507a90038ca8fee55cb90391276c0c4323281a7">5507a900</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-09-28T08:24:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#6a72979c82bcfd2abf4068246ff6caa52092f4d7">
<span class="new-file">
+
.github/workflows/python_publish.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b650a02deb9f16531aec1c8085f25f4f1e9942de">
<span class="deleted-file">
−
.hg_archival.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#fc1a47a75cc8dc593b20b5e840173df634b008a1">
<span class="deleted-file">
−
.hgtags
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#b3f55b8d9783f2ed27acfd1f0fe06dfc461e2aba">
<span class="new-file">
+
debian/NEWS
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#fc932f0eaa389a4e2b93916f3995aae4019ea823">
<span class="deleted-file">
−
debian/get-orig-source
</span>
</a>
</li>
<li class="file-stats">
<a href="#efc7fe57b5983b0283c6410fceef7e74f687aeb5">
<span class="new-file">
+
debian/lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#5d4442259fcbcf72cb475dc29801ce2b63b912fc">
debian/mans/lefse2circlader.1
→
debian/mans/lefse2circlader.py.1
</a>
</li>
<li class="file-stats">
<a href="#136bed40a0450affd2ce26033882cc03ef09461e">
debian/mans/format_input.1
→
debian/mans/lefse_format_input.py.1
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</li>
<li class="file-stats">
<a href="#f069c71c623619a9ff5b64bcc18b61f2cf361365">
debian/mans/plot_cladogram.1
→
debian/mans/lefse_plot_cladogram.py.1
</a>
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<li class="file-stats">
<a href="#995adf33abf6358e49887b06185a5c8e94a3cbc4">
debian/mans/plot_features.1
→
debian/mans/lefse_plot_features.py.1
</a>
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<li class="file-stats">
<a href="#80e1bb47348c42cbf6fe97197d74be8421880065">
debian/mans/plot_res.1
→
debian/mans/lefse_plot_res.py.1
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<li class="file-stats">
<a href="#5f323d4b3354505e8428c49512c1cf95228596e7">
debian/mans/run_lefse.1
→
debian/mans/lefse_run.py.1
</a>
</li>
<li class="file-stats">
<a href="#5858a3d1a355bfed9480b32c9bc79f1e52eb288b">
debian/mans/qiime2lefse.1
→
debian/mans/qiime2lefse.py.1
</a>
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
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debian/salsa-ci.yml
</span>
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<li class="file-stats">
<a href="#e0cbeffc38b5d9625c89003c52a2bcddab1d510a">
example/run.sh
→
example/bioconda-lefse_run.sh
</a>
</li>
<li class="file-stats">
<a href="#64dacf3cc2944ac15ad587c14091f3eb010c3c9a">
<span class="deleted-file">
−
format_input.py
</span>
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</li>
<li class="file-stats">
<a href="#e25186744509cdf58807fcc3b9796365474854d0">
<span class="deleted-file">
−
lefse.py
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<li class="file-stats">
<a href="#e19153274f097bd664c2e8220001448259d4e874">
__init__.py
→
lefse/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e7d0e078078e3804c4c00b64b2586f05863bd104">
<span class="new-file">
+
lefse/__pycache__/__init__.cpython-38.pyc
</span>
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<li class="file-stats">
<a href="#3d877ad855b3cc109544f2d2ba3ddf9b033ec2b9">
<span class="new-file">
+
lefse/__pycache__/lefse.cpython-38.pyc
</span>
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</li>
<li class="file-stats">
<a href="#299caed15854e043114568ffe5b39c1ea2d80aeb">
<span class="new-file">
+
lefse/lefse.py
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<li class="file-stats">
<a href="#3edd3305c9b8de59b711b1b059bd87f0716b6b5a">
<span class="new-file">
+
lefse/lefse.pyc
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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