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GitLab

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<h3>

Michael R. Crusoe pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>

</h3>

<h4>

Commits:

</h4>

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<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/033eb5257f0fb2759ac2567d5922617d53e804a3">033eb525</a></strong>

<div>

<span>by Michael R. Crusoe</span>

<i>at 2021-09-29T17:31:02+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.5.0</pre>

</li>

</ul>

<h4>30 changed files:</h4>

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<a href="#b8baf23d7ed7f2b79b86aeb041867428fb196428">

.github/PULL_REQUEST_TEMPLATE.md

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<li class="file-stats">

<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">

.gitignore

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<li class="file-stats">

<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">

.gitlab-ci.yml

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<li class="file-stats">

<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">

<span class="deleted-file">

−

.travis.yml

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<li class="file-stats">

<a href="#889c91308449c65c309146f6487ae74af64de5e9">

contrib/admin/mypy-with-ignore.py

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<a href="#3411d931b61e6ce9fb79bce1346aa3d960a9eb0e">

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+

contrib/admin/wheel-of-issues

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<li class="file-stats">

<a href="#a915df80a5fdeac265df899250374b4fea5719c9">

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+

contrib/typeshed/dill/__init__.pyi

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<li class="file-stats">

<a href="#5bafdcb13268019d7dbeff10d85920758c72ebab">

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+

contrib/typeshed/dill/_dill.pyi

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<li class="file-stats">

<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">

docs/appendices/environment_vars.rst

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<a href="#5e25feb6b25012c00d6a27af4470f92ec5ccb67b">

docs/developingWorkflows/developing.rst

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<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">

docs/running/cliOptions.rst

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<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">

docs/running/cloud/clusterUtils.rst

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<li class="file-stats">

<a href="#54aa56c0c0e2cd49ea7a6083879baecb55a418b1">

docs/running/cwl.rst

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<li class="file-stats">

<a href="#f4fb69164b97e1b6f17984369c9c382573a3f919">

requirements-dev.txt

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<li class="file-stats">

<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">

setup.py

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<li class="file-stats">

<a href="#59062b9d0a92eb7800de569b9a6c8818efe8a415">

src/toil/batchSystems/abstractBatchSystem.py

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<li class="file-stats">

<a href="#e80ba9107fbe8c247c4a06d919de60d903b13b57">

src/toil/batchSystems/abstractGridEngineBatchSystem.py

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<a href="#8665892a623b484a6317e6aef58200c3f489951b">

src/toil/batchSystems/gridengine.py

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<li class="file-stats">

<a href="#8354e49ab5525eaccab005722337809789a2b4c8">

src/toil/batchSystems/htcondor.py

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<li class="file-stats">

<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">

src/toil/batchSystems/kubernetes.py

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<li class="file-stats">

<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">

src/toil/batchSystems/lsf.py

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<li class="file-stats">

<a href="#da04225838d2734baa1efa5147660ca1e6d2df14">

src/toil/batchSystems/lsfHelper.py

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<li class="file-stats">

<a href="#51c103b23323037f067bfea96a5cd293cbd8bfab">

src/toil/batchSystems/mesos/batchSystem.py

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<li class="file-stats">

<a href="#99c24d1b30534d665746feee900c46f6e8459b39">

src/toil/batchSystems/options.py

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<li class="file-stats">

<a href="#3b4a80aeb26889e43a5c09dff447542212e3bf8d">

src/toil/batchSystems/parasol.py

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<li class="file-stats">

<a href="#e5d02c7b50182649b621d35c687c50730f0655de">

src/toil/batchSystems/registry.py

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<li class="file-stats">

<a href="#40d7e534600c41f2ac23866cd2edfb31bccd3afe">

src/toil/batchSystems/singleMachine.py

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<li class="file-stats">

<a href="#a6f3af15c881ae20fc1a43acbbeb46501aac42d1">

src/toil/batchSystems/slurm.py

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<li class="file-stats">

<a href="#613fd687d50c98ed88dd86e84d2d6b01865013f3">

src/toil/batchSystems/torque.py

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<li class="file-stats">

<a href="#b5ab9a61b11b6e94229af5e4ca02bbd23c142a9d">

<span class="new-file">

+

src/toil/bus.py

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</a>

</li>

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<h5>The diff was not included because it is too large.</h5>

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